Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04554 ATGAATAATAGTAATAATAATCAAGGGAATAATTTTGCTGCATCTGCATCATCATCGTTGTTTGGTCGTTCTGCAACAATGCCACTGCCACATCAGCAGCAGTACCCTAACCTTATGAGCCATCAGCAGCAATGGGCACATGTTCTGTCTAGATCAAACCCTCAAACCCAGTTTCATGGTAATTTTCCGTTTGCGGAATCCCAATCGCAACCTCAAGCGGCGCTGCAGGCTCATTATGCACAATTGCAAGCTCAGGCTGCTTATGGTTCTTTACAATCCTCACAAGCTCAGCCTGTTACCCCGTTGCGTAGTGCTGGTAATACTACTAATGTTGGACTTGGATCAACTCCGGTTACTGGAAGCTCGAAGCGAGCTGCGTCTCAGAGAAATTCTTTGCGGACTCCAGGTTCGTCTGGTGTGAGTCAAAATGTGTTGGATAATAAGAGTGCGGATTTGACTCCTGCTTCTCGGCGAAGGAAGAGGGAGTTACTGGAGAAGCAAGTGGCTGCGATTCTGCCTGAATCTGCGCTTTATACTCAATTGCTTGATTTTGAAGCTCAGATCGATGCTGCATTGGATAAGAAAAAGGTTGATATGCAGGAGGCTATTAGAAGTCCTACCCATGTTCAGAAAACTCTTAGAATGTATGTGTTTAATACATTCTCGAATCGCTCAAAAGCTAGCTCTGAGGATACAACTGCGGAGGAATCTTCTTGGTCTTTGAAGATAATTGGAAGGGTATTGGAAGATGGTAATGGTCCTGTGTCGGGAATTTCGCAGAGATCGAGTCCTTGTGATACAAAATTCTCTGATTTCTTCAAGAAAGTTACCATTTGCTTGGATCAGAACCTCTATCCTGAAAACCACATCATTGTGTGGGACAGTGCTCGTTCGCCGAAACAACAGGACGGGTTTGAGGTGAAGAGGAAAGGAGACAAAGAATTCACTGCAGTGATCAAAATAGATTTGAAATATTCACCCGAGAAATTCATGGTCTCGGCGGCATTGTCTAAACTTTTAGGGATTGAGGTTGAGAGTCGCCCGAGAATCATAGCTTCTCTTTGGCATTATGTGAAGTCCAGGAGGCTACAGTGTCCGGATGAACCTTCGTCCTTCATCTGTGATCCTTCCCTCCAAAGGATTTTCGGGGAAGAGAAGATGGGATTCTCCATGGCTGCTCAGAAGTTGTTAGACCATTTATCACCACCAAAGCCTATATATTTGGAGCATAACATCAAGCTTTCTGGTGATTGCCCTGCCGGAACTGCATGTTACGACGTACAGGTTGACGTGCCTATACTATTGCAGAAAGAAATGTCTGCATTTTTGGCTAGCAACAGCGTTGAGAGTCACAAAGAGATTGAAGCTTCTGATGAGATTATCTCTAGTAACCTAAAGAAAATCCAAGAGCATCGTAGAAGACGTGCTTTCTTTCTTAGCTTTAGTCAGTCTCCATCAGAGTTTATCAATGCTATGATTGCTTCTAAGAGCAAGGATCCAAAGCATGCTGCTGGAGATGCTGGCTGTAATTCCAACAAGGAACAGCATTCTGAATTTTACAATCAACCATGGGCTGAAGATGCTGTTATTCGATACTTGAATCGTAAAGCTGCTGGAAGAGATGCTCCTGAGGGTAACTAA 1641 0.4394 MNNSNNNQGNNFAASASSSLFGRSATMPLPHQQQYPNLMSHQQQWAHVLSRSNPQTQFHGNFPFAESQSQPQAALQAHYAQLQAQAAYGSLQSSQAQPVTPLRSAGNTTNVGLGSTPVTGSSKRAASQRNSLRTPGSSGVSQNVLDNKSADLTPASRRRKRELLEKQVAAILPESALYTQLLDFEAQIDAALDKKKVDMQEAIRSPTHVQKTLRMYVFNTFSNRSKASSEDTTAEESSWSLKIIGRVLEDGNGPVSGISQRSSPCDTKFSDFFKKVTICLDQNLYPENHIIVWDSARSPKQQDGFEVKRKGDKEFTAVIKIDLKYSPEKFMVSAALSKLLGIEVESRPRIIASLWHYVKSRRLQCPDEPSSFICDPSLQRIFGEEKMGFSMAAQKLLDHLSPPKPIYLEHNIKLSGDCPAGTACYDVQVDVPILLQKEMSAFLASNSVESHKEIEASDEIISSNLKKIQEHRRRRAFFLSFSQSPSEFINAMIASKSKDPKHAAGDAGCNSNKEQHSEFYNQPWAEDAVIRYLNRKAAGRDAPEGN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04554 546 Gene3D SWIB/MDM2 domain 323 407 IPR036885 -
Vivi3g04554 546 CDD SWIB_like 332 400 - -
Vivi3g04554 546 MobiDBLite consensus disorder prediction 98 158 - -
Vivi3g04554 546 SMART swib_2 326 405 IPR019835 -
Vivi3g04554 546 Pfam SWIB/MDM2 domain 329 400 IPR003121 -
Vivi3g04554 546 ProSiteProfiles SWIB/MDM2 domain profile. 325 402 IPR003121 -
Vivi3g04554 546 MobiDBLite consensus disorder prediction 98 150 - -
Vivi3g04554 546 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 147 499 - -
Vivi3g04554 546 SUPERFAMILY SWIB/MDM2 domain 323 410 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04554 Vivi-Chr3 82616662 82619071 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vivi3g04554 SWIB 3.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04554 K11650 - gmx:100784907 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04554 3 82616662 82619071 Vivi3g04554 3 82616662 82619071 ECH