Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04530 ATGGCCATGTGTAGGTGTGTTTCTGTTTTGATTGGAAGGAAGAATAAAATCAAGGGCATTGAAGGATCATCAAAGAGTCGTGATTTAAAGCCTGATGCCACCCAGATGAATTCGAGGTGTAATGTGAAAGTTATGAGTCTCGAGAGTCCTATGAAGACTGAAGTACAAGAAGCGTATGACGGGGAAGATGAGCATGAAGATTCACCATCCATCAAGAGAGAGCTATCTGATTTTGATCTCCAAGTTCATGAAGCTGTTGCAAGTAAAGGAGGATATGATCGAATAGGTAAGGAGATGAACACCCACAGTTTATATAAAAAACAAGTCAACATTCAATTGGAAGACAGAGATGATAAATACAACAAAAAGAGCGTTGATTTAATCCTAAGTGGGCATGTCAGTGATCCTGGGATTGGCAAGTGTGACTTCTGGGATTCTCCAAAGCTGAAGCGATCTTGTTCTAACCTGGAAAGAAGGGATATACTTAGGAAGACTGCTCATCACTTTCCATCTTCAAAGTTAAGATCTTTTGAGGATTTACAAGAATTATCCGCAAATTTAGAAAGTCCCAGGTCTGTGATGACTCAGCGCAGTGCTGATAAAGTGATGTTGAAAAGGCGTTCGTCTAGTCAAGTTCTCCCTTCTGGAAGTAAGAAATTATGGTGGAAGTTGTTCCTCTGGAGCCACAGGAACATTCATTTACCTTTGGTCAGCAAATCAACACAATTACATCCTGCAAATGCAGTTTTGAATAATCAATGCGGGTACTCTTCAGATATCCTGGAGCCAAAACAAGGTAAGACATTGAGACACGTGAGATCGCCCTCTCCTGCATCATCGTCTGGGGAGTACTTTAGGAATAGGGGAAAGGATAAAATTATTGAAAATCCAAGGCGGAGCAGATTTCACAAGGAAAAAAACTTGGATTTTTGGACACAAAATCAATGGGTTGCCTTCTCAGCAGAACCCTCCTCCTTTAACAGAGTGGATGAGTGGGTGAAAGATCTTGAAAATCAGCAGCCACCTCCTGAGGATGATTTTACTGTTGACAATATTGGAAGCATTGACCTGCCATCTTCTCCAGATGCTGATAGATCAATTGCAAGAAGCACGACCCAGTTGACTCGACATCAAGATGCCGATTTTTCAAAGGATATTTTGTACGCTAATAGCGTGGTCCAGTCTCTGAATTCAACCTCAACTGCAGCTCATATATGTGGTATTGGTATTAAAGCCATCCCCACAATAGCACACTTCTCCAGTCTTCGCTCAGTGAATTTGTCTAACAATTTCATAGTTCATATCACACCTGGATTTCTCCCAAAGAGTCTTCACACACTAAATTTGTCAAGAAACAAGATCAGCACCATTGAGGGCCTCCGAGAATTAACTCGATTGCGTGTACTTGACCTAAGTTATAATCGCATCTCAAGAATTGGACAAGGGTTATCAAATTGTACACCGATTAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGGCTTCACCGGTTATTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAGGATAACAACAACAAAAGCATTAGGCCAGCTTGTAGCAAACTACAACTCACTTCAGGCCCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCGGTGATGAGCAACTGCGCAAAGCAGTCTGTGGTCTTCTTCCAAAGCTAGTATACCTGAACAAGGATGCCATCAAGCCTCAAAGGGCTAGAGAGATGCTCACTGATAGTGTTGCCAAAGCTGCACTTGGAAACAGCAGCCGGTCCTCCAACAGAAGAGCACTAAAGAAAGGAGTCCAAGGAGGATCAAGTTCCTCCAGTGTGCATAGAAGCAGCACTGGTTTAGCCCAGAAAAGCAGGCACAGGTCCAAGAGCCGATCTAAACATCAGTAG 1923 0.4243 MAMCRCVSVLIGRKNKIKGIEGSSKSRDLKPDATQMNSRCNVKVMSLESPMKTEVQEAYDGEDEHEDSPSIKRELSDFDLQVHEAVASKGGYDRIGKEMNTHSLYKKQVNIQLEDRDDKYNKKSVDLILSGHVSDPGIGKCDFWDSPKLKRSCSNLERRDILRKTAHHFPSSKLRSFEDLQELSANLESPRSVMTQRSADKVMLKRRSSSQVLPSGSKKLWWKLFLWSHRNIHLPLVSKSTQLHPANAVLNNQCGYSSDILEPKQGKTLRHVRSPSPASSSGEYFRNRGKDKIIENPRRSRFHKEKNLDFWTQNQWVAFSAEPSSFNRVDEWVKDLENQQPPPEDDFTVDNIGSIDLPSSPDADRSIARSTTQLTRHQDADFSKDILYANSVVQSLNSTSTAAHICGIGIKAIPTIAHFSSLRSVNLSNNFIVHITPGFLPKSLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTPIKELYLAGNKISDVEGLHRLLKLTVLDLSFNRITTTKALGQLVANYNSLQALNLLGNPIQSNIGDEQLRKAVCGLLPKLVYLNKDAIKPQRAREMLTDSVAKAALGNSSRSSNRRALKKGVQGGSSSSSVHRSSTGLAQKSRHRSKSRSKHQ 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04530 640 FunFam Outer arm dynein light chain 1 protein 368 481 - -
Vivi3g04530 640 PANTHER NISCHARIN RELATED 181 628 - -
Vivi3g04530 640 MobiDBLite consensus disorder prediction 593 640 - -
Vivi3g04530 640 SMART LRR_typ_2 463 486 IPR003591 -
Vivi3g04530 640 SMART LRR_typ_2 419 441 IPR003591 -
Vivi3g04530 640 SMART LRR_typ_2 508 530 IPR003591 -
Vivi3g04530 640 MobiDBLite consensus disorder prediction 625 640 - -
Vivi3g04530 640 Coils Coil 637 640 - -
Vivi3g04530 640 Pfam Leucine rich repeat 421 476 IPR001611 GO:0005515
Vivi3g04530 640 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Vivi3g04530 640 ProSiteProfiles Leucine-rich repeat profile. 488 509 IPR001611 GO:0005515
Vivi3g04530 640 SMART LRR_sd22_2 508 529 - -
Vivi3g04530 640 SMART LRR_sd22_2 441 462 - -
Vivi3g04530 640 SMART LRR_sd22_2 463 485 - -
Vivi3g04530 640 SMART LRR_sd22_2 486 507 - -
Vivi3g04530 640 Gene3D Ribonuclease Inhibitor 393 483 IPR032675 -
Vivi3g04530 640 MobiDBLite consensus disorder prediction 593 624 - -
Vivi3g04530 640 ProSiteProfiles Leucine-rich repeat profile. 443 464 IPR001611 GO:0005515
Vivi3g04530 640 ProSiteProfiles Leucine-rich repeat profile. 510 531 IPR001611 GO:0005515
Vivi3g04530 640 FunFam Outer arm dynein light chain 1 protein 482 580 - -
Vivi3g04530 640 SUPERFAMILY Outer arm dynein light chain 1 413 575 - -
Vivi3g04530 640 Gene3D Ribonuclease Inhibitor 484 580 IPR032675 -
Vivi3g04530 640 MobiDBLite consensus disorder prediction 265 285 - -
Vivi3g04530 640 Pfam Leucine Rich repeat 510 522 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04530 Vivi-Chr3 82224618 82228014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04530 414 540 Receptor kinase-like Gene Family AT4G08850 34.058 2.84e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04530 - - cam:101493323 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04530 3 82224618 82228014 Vivi3g04530 3 82224618 82228014 ECH