Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04497 ATGGAGCAATTCACCAACGACGATCTCGAATACGTTAACGACGACTACTTCGAATTCTCCGATTTCGAAGACGACGAAACCTTCTCCACCAATGTTCCTCAACACCGTACCTCCGATGCCGCCACTCCCGACTCCGACTCCGAAGACGAGTTTGATACGAGTAATGCGAAGACGGATACTTCTGCTTTGGAAGCGAGAAACGGGAAGGATATTCAGGGAATTCCATGGGAGATGCTTAATTATACTAGAGATGAGTACCGTGAAACTCGGTTGAAACAGTATAAGAATTACGAGAGCCTCACGCGCTCTCATGAGGAACTTGATAAGGAATGTTTGGAAGTGCAGAAAGGGAAATCGTATTATGATTTTCAGTTCAATACCAGGCTTGTCAAATCAACAATTGTGCACTTTCAGCTGAGGAATCTGTTGTGGGCAACATCAAAGCATGATGTATACCTTATGCAAAACTACTCCGTGATGCATTGGTCCTCATTACTACGAAGGAGTAAAGAAGTGCTTAATGTGGCAAAACCGATTATCCCAACCCTTAAGCATTCTGGATTAGCTCACCCTATCTCGCGAGTGCAAATTAGCACCATGGCTGTTAAGGAGAACCTGATGGTGGCAGGTGGTTTCCACGGCGAGCTTATTTGCAAGAATTTGAATCATTCTGGAGTTGCATTCTGCAGTAAAATAACTACCGATGATAATGCTATAACCAATGCAGTGGATATCTTCCGCAACCCCAGTGGGTCATTGAGGGTCATTGCAGCAAATAATGATTCCCAAATTCGGGTTTTTGATTCAGAGAATTTCGCTTCTCTTGGTAGTTTCAAATATGATTGGTCTGTCAATAATGCTTCTGTTAGTCCGGATGGAAAGTTGTTAGCTGTTCTTGGAGACAGTACTGAGGGCTTAATAGCTGATGCTAACACGGGAAAGATCACTGGAAACCTAAAAGGGCACTTGGACTATTCTTTCTCATCTGCTTGGCATCCTAACGGACAAATTTTAGCTACCGGGAATCAGGACAGAACATGCAGGTTGTGGGATGTAAGAAATCTTTCGCAGTCCTTAGCAGTCTTAAAGGGAAGAATAGGTGCAATAAGGGGCTTAAGATTCACATCAGATGGACGGTTTTTGGCCATGGCTGAGCCAGCAGATTTCGTCCATGTTTTTGATTCGCAATCTGGTTATGCACATAGTCAAGAGATAGATATATTTGGTGAGATTGCTGGTATATGTTTTAGCCCTGACACTGAGGCTCTGTTTGTTGGTGTTGCTGATCGAATGTACGGTAGCTTGTTAGAGTTCACCAGAAAACATTATTATCAGTATCTAGACTCAATGCTTTAA 1356 0.4314 MEQFTNDDLEYVNDDYFEFSDFEDDETFSTNVPQHRTSDAATPDSDSEDEFDTSNAKTDTSALEARNGKDIQGIPWEMLNYTRDEYRETRLKQYKNYESLTRSHEELDKECLEVQKGKSYYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRSKEVLNVAKPIIPTLKHSGLAHPISRVQISTMAVKENLMVAGGFHGELICKNLNHSGVAFCSKITTDDNAITNAVDIFRNPSGSLRVIAANNDSQIRVFDSENFASLGSFKYDWSVNNASVSPDGKLLAVLGDSTEGLIADANTGKITGNLKGHLDYSFSSAWHPNGQILATGNQDRTCRLWDVRNLSQSLAVLKGRIGAIRGLRFTSDGRFLAMAEPADFVHVFDSQSGYAHSQEIDIFGEIAGICFSPDTEALFVGVADRMYGSLLEFTRKHYYQYLDSML 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04497 451 Gene3D - 170 432 IPR015943 GO:0005515
Vivi3g04497 451 Pfam WD domain, G-beta repeat 314 351 IPR001680 GO:0005515
Vivi3g04497 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Vivi3g04497 451 MobiDBLite consensus disorder prediction 23 64 - -
Vivi3g04497 451 SUPERFAMILY WD40 repeat-like 181 430 IPR036322 GO:0005515
Vivi3g04497 451 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 448 - -
Vivi3g04497 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515
Vivi3g04497 451 SMART WD40_4 213 268 IPR001680 GO:0005515
Vivi3g04497 451 SMART WD40_4 271 309 IPR001680 GO:0005515
Vivi3g04497 451 SMART WD40_4 312 351 IPR001680 GO:0005515
Vivi3g04497 451 SMART WD40_4 355 394 IPR001680 GO:0005515
Vivi3g04497 451 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Vivi3g04497 451 FunFam WD-40 repeat family protein 232 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04497 Vivi-Chr3 81257129 81262243 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04497 297 430 Miscellaneous Gene Families AT5G08390 28.966 1.59e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04497 - - mtr:25489425 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04497 3 81257129 81262243 Vivi3g04497 3 81257129 81262243 ECH