Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04494 ATGTCCCTCTCATCTCCCACCTTTACCTTTCTCACCATCATCTTCCTTTTCCTCACTCTCACTCCCAACCTCACCCTCACTCAGCTCCCTCCATTTGCTTGTGACTCTTCAAATCCATCCACCAGATCCTACCCATTCTGCAACCCAAAGCTTCCCATCACACAACGAACCAGAGACCTTGTTTCCAGACTCACATTGGATGAGAAACTCTCTCAACTCGTTAACTCAGCTCCTCCCATTCCCCGACTCGGTATCCCTGGTTACCAGTGGTGGAGTGAAGCACTTCATGGAGTTGGCAATGTTGGTCGTGGCATCTTCTTCAATGGAACTATCACTTCCGCAACTAGCTTCCCTCAAGTTATACTCACCGCAGCTACATTTGATTCTCACCTTTGGTATCGAATCGGTCAGGTAATTGGGGTTGAAGCAAGAGCAATGTACAATGGAGGGCAAGCAATGGGGATGACATTTTGGGCACCAAACATAAACATATTTAGGGATCCAAGATGGGGGAGAGGACAAGAAACAGCTGGTGAAGACCCTATGATGACTTCTAACTATGCTGTTTCCTATGTTAGAGGACTTCAAGGTGATTCTTTTCAAGGTGGTAAGTTAAGGGGACACCTTCAAGCTTCTGCTTGTTGCAAACATTTCACTGCCTATGATTTGGATAATTGGAAGGGTGTTAATCGCTTTCACTTCGATGCTAAAGTAAGTTTGCAAGATTTAGCAGACACATATCAGCCACCGTTTCGAAGTTGCGTAGAGCAAGGACGAGCTAGCGGGATAATGTGTGCTTATAACCGTGTAAATGGCATTCCAAGTTGTGCTGATTACAATCTCTTAACTAAAACAGTTAGAAAACAATGGAGATTCCACGGGTATATCGCATCAGATTGTGGAGCTGTTGGGATCATACATGACCAGCAAGGATATGCAAAATCAGCAGAAGATGCTGTAGCCGATGTTATGCATGCTGGGATGGATTTGGAATGTGGAACTTATTTGACAGACCATGCAAAATCAGCGGTGCAGCAGAATAAGTTACCGATATATCAAATAGACCGTGCTCTTCATAATCTATTTTCAATTAGAATAAGGCTAGGCTTATTTGGGGGAAATCCAGCCAAGCTTCCATTTGGAATGATTGGTCCCAACCACGTCTGTTCCGAAAATCACTTATTTCTAGCTCTGGAAGCTGCAAGAAACGGCATTGTCCTTTTAAAGAATACTGCTTCACTACTTCCACTTCCTAAAACTAAAATTTCCTTAGCAGTGATAGGTCCTAATGCCAATGTTTCACCTTTAACTCTTCTAGGAAACTACGCCGGTCCTCCTTGTAAATATATCACTATACTTCAAGGGTTTCAACATTATGTTAAGGACGCTGTTTTTCATCCCGGCTGTGATGGTGGACCAAAGTGTGCTTCAGCGCAAATAGACCAAGCAGTGGAAGTTGCAAAGAAAGTTGATTATGTGATTTTGGTTATGGGTTTGGACCAAAGTGAAGAGAGGGAAGAACGCGATCGTGTTCACCTTGACTTGCCAGGCAAGCAACTTGAACTCATTAACAGTGTTGCCAAAGCTTCCAAGCGACCAGTTATTTTGGTGCTCCTTTGTGGAGGCCCGATAGATATTAGTTCAGCCAAATATAACGATAAAATTGGAGGTATCATTTGGGCTGGTTATCCTGGTGAACATGGAGGCATTGCACTTGCACAGATTATCTTTGGTGATCACAATCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTACGTAAAAGTGCCAATGACAGACATGAGGATGAGAGCTGATCCTTCAACCGGCTATCCAGGAAGAACTTACCGATTTTACAAGGGTCCTACGGTGTACAAATTTGGCTACGGACTAAGCTACACAAAATATTCCTACGAGTTTGTTTCCGTCACACATGACACACTTCATTTCAATCAATCATCCACTCATTTGATGATTGAAAACTCAGAAACCATAAGGTACAAACTAGTTTCAGAGTTGAGCGAAGACACCTGCAAAAGCATGTCGGTTTCAGTCACAGTTGGTGTCAAAAACCATGGAAACATGGTGGGGAGACATCCTATATTGCTGTTTATGAGACCATGGAAACAGAGAATTGGAAGTCCTAGGAAACAATTGGTTGGTTTTCATAGTTTGTTGTTAGATGCCGGGGAAAGGAGCCATGTTGGATTTGAGCTGAGTCCTTGTGAACATCTTAGTCGAGCGAACGAGGCTGGTTTAAAGATCATAGAAGAAGGGTCTCATTTGTTACTTGTGGGAGATGAAGAATATCTAATAGATATCATTGTTTGA 2337 0.43 MSLSSPTFTFLTIIFLFLTLTPNLTLTQLPPFACDSSNPSTRSYPFCNPKLPITQRTRDLVSRLTLDEKLSQLVNSAPPIPRLGIPGYQWWSEALHGVGNVGRGIFFNGTITSATSFPQVILTAATFDSHLWYRIGQVIGVEARAMYNGGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPMMTSNYAVSYVRGLQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFHFDAKVSLQDLADTYQPPFRSCVEQGRASGIMCAYNRVNGIPSCADYNLLTKTVRKQWRFHGYIASDCGAVGIIHDQQGYAKSAEDAVADVMHAGMDLECGTYLTDHAKSAVQQNKLPIYQIDRALHNLFSIRIRLGLFGGNPAKLPFGMIGPNHVCSENHLFLALEAARNGIVLLKNTASLLPLPKTKISLAVIGPNANVSPLTLLGNYAGPPCKYITILQGFQHYVKDAVFHPGCDGGPKCASAQIDQAVEVAKKVDYVILVMGLDQSEEREERDRVHLDLPGKQLELINSVAKASKRPVILVLLCGGPIDISSAKYNDKIGGIIWAGYPGEHGGIALAQIIFGDHNPGGRLPITWYPKDYVKVPMTDMRMRADPSTGYPGRTYRFYKGPTVYKFGYGLSYTKYSYEFVSVTHDTLHFNQSSTHLMIENSETIRYKLVSELSEDTCKSMSVSVTVGVKNHGNMVGRHPILLFMRPWKQRIGSPRKQLVGFHSLLLDAGERSHVGFELSPCEHLSRANEAGLKIIEEGSHLLLVGDEEYLIDIIV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04494 778 Pfam Fibronectin type III-like domain 705 769 IPR026891 -
Vivi3g04494 778 SMART Fn3_like_2 701 771 IPR026891 -
Vivi3g04494 778 Pfam Glycosyl hydrolase family 3 N terminal domain 111 361 IPR001764 GO:0004553|GO:0005975
Vivi3g04494 778 Gene3D - 391 636 IPR036881 GO:0004553|GO:0005975
Vivi3g04494 778 Gene3D Immunoglobulins 664 776 IPR013783 -
Vivi3g04494 778 PRINTS Glycosyl hydrolase family 3 signature 211 227 IPR001764 GO:0004553|GO:0005975
Vivi3g04494 778 PRINTS Glycosyl hydrolase family 3 signature 117 136 IPR001764 GO:0004553|GO:0005975
Vivi3g04494 778 PRINTS Glycosyl hydrolase family 3 signature 285 303 IPR001764 GO:0004553|GO:0005975
Vivi3g04494 778 Pfam Glycosyl hydrolase family 3 C-terminal domain 405 635 IPR002772 GO:0004553|GO:0005975
Vivi3g04494 778 SUPERFAMILY (Trans)glycosidases 44 403 IPR017853 -
Vivi3g04494 778 Gene3D - 56 378 IPR036962 GO:0004553|GO:0005975
Vivi3g04494 778 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 405 638 IPR036881 GO:0004553|GO:0005975
Vivi3g04494 778 FunFam probable beta-D-xylosidase 2 390 636 - -
Vivi3g04494 778 PANTHER SUGAR HYDROLASE-RELATED 28 773 IPR044993 GO:0009044|GO:0045493
Vivi3g04494 778 FunFam probable beta-D-xylosidase 7 56 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04494 Vivi-Chr3 81232354 81236160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04494 30 771 Glycoside Hydrolase AT1G78060 65.775 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04494 - - aprc:113867121 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04494 3 81232354 81236160 Vivi3g04494 3 81232354 81236160 ECH