Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04487 ATGGCTAGTGCCGGGCATGGAAATGGGCACATAAACGGTGTGGTACCGAATAGGCACACTGCTACAATATCTGAAGTAGATGAATTCTGCAATGCCCTGGGGGGAAACAGGCCGATTCATAGTATATTGATTGCGAACAATGGAATGGCGGCTGTCAAGTTTATACGCAGTGTTAGGAGTTGGGCTTACGAGACCTTTGGCACGGAAAAGGCTATCTTGTTGGTTGCCATGGCTACTCCAGAAGATATGAGAATCAATGCCGAACATATCAGAATAGCTGATCAGTTTGTGGAAGTTCCTGGTGGGACCAATAACAATAACTACGCCAACGTGCAGCTTATTGTAGAGATTGCTGAGATAACTCATGTTGATGCGGTATGGCCTGGTTGGGGTCATGCATCAGAGAATCCCGAGCTACCAGATGCATTAAAAGCAAAAGGAATTGTATTTCTTGGACCTCCTGCGGTATCTATGGGGGCATTGGGAGATAAAATTGGTTCATCGTTGATTGCTCAAGCAGCAGATGTGCCAACCCTTCCATGGAGTGGTTCACATGTGAAAATTCCTCCTGAAAGCTCCTTGATTACTATTCCTGATGAAATTTACCGGGCAGCATGTGTTTATACAACAGATGAAGCAATTGCAAGTTGTCAAGTTGTTGGATACCCTGCAATGATCAAAGCATCTTGGGGTGGTGGTGGTAAAGGCATAAGAAAGGTTCATAATGATGATGAGGTAAGGGCACTGTTCAAACAAGTTCAAGGTGAAGTTCCGGGCTCACCTATATTTATAATGAAAGTTGCTTCCCAGAGCCGGCATCTTGAAGTCCAACTGATTTGTGATCAGTATGGAAATGTTGCCGCTTTACACAGCCGTGATTGCAGTGTTCAAAGAAGGCATCAAAAGATTATTGAGGAGGGTCCTATTACTGTAGCACCCCCAGAAACGGTGAAAGAACTTGAACAGGCGGCTAGAAGATTAGCTATATCTGTAAATTATGTTGGGGCAGCTACCGTTGAGTATCTTTATAGCATGGAAACTGGCGAGTACTACTTTTTAGAGCTGAACCCCCGATTACAGGTTGAGCATCCTGTTACTGAATGGATAGCTGAGATCAATCTTCCAGCAGCACAAGTTGCCGTTGGGATGGGTATCCCTCTCTGGCAAATTCCTGAGATTAGGCGATTCTATGGGAAGGAACACGGTGGAGGGAATGATGCGTGGAGGAAAACATCAGTTTTAGCTACCCCTTTTGATTTTGACAAAGCACAGTCTACAAAGCCAAAAGGCCATTGTGTAGCTGTGAGAGTGACTAGCGAGGACCCCGATGACGGTTTCAAGCCTACAGGCGGGAAAGTGCAGGAGCTCAGCTTTAAAAGCAAGCCAAATGTTTGGGCTTACTTCTCTGTTAAGTCTGGAGGAGGAATCCATGAATTTTCAGATTCCCAGTTTGGACATGTTTTTGCCTTTGGAGAATCGAGGGCTTTAGCAATTGCAAATATGGTTTTGGGGCTGAAGGAAATTCAAATTCGAGGAGAAATCCGTACCAACGTTGATTATACAATTGATCTTCTGAATGCTTCAGACTACAGAGATAACAAAATTCACACAGGATGGCTGGACAGTAGAATTGCAATGCGGGTTAGAGCAGAGAGGCCTCCTTGGTATCTGTCTGTTGTTGGAGGGGCACTCTATAAAGCTACTGCTAGTAGTGCTGCATTGGTTTCAGACTATGTTGGCTATCTTGAGAAGGGGCAAATCCCTCCTAAGCACATATCTCTTGTCCATTCTCAAGTGTCCTTGAGCATTGAAGGAAGCAAATATACTATTGACATGATACGAGGAGGACCTGGAAGTTATAAATTGAAATTGAATCAATCAGTGATAGAAGCAGAGATACATACTTTACGTGATGGAGGTTTGTTGATGCAGTTGGATGGAAACAGTCATGTAATTTATGCAGAAGAAGAAGCAGCTGGAACTCGTCTTCTAATTGATGGAAGGACTTGCTTGCTTCAGAATGACCACGATCCATCAAAGTTGATTGGAGAGACACCATGCAAGCTTCTGAGATATTTGGTTGCAGATGACAGTCACATTGACGCAGACACACCATATGCTGAAGTTGAGGTCATGAAGATGTGTATGCCTCTTCTCTCCCCTGCTTCCGGGATTATTCATTTCAGAATGGCTGAAGGCCAAGCCATGCAGGCTGGTGAACTTATAGCAAGGCTTGATTTAGATGATCCTTCTGCTGTAAGAAAGGCAGAGCCCTTCACTGGGAGCTTCCCAATTCTGGGCCCTCCTACGGCAATTTCAGGTAAAGTTCATCAGAAGTGTGCCGCAAGCTTAAATGCTGCACGGATGATTCTTGCTGGCTACGAGCACAATATTGATGAAGTTGTCCAAAGTTTGCTCAATTGCCTTGACAGCCCTGAATTACCTTTCCTTCAATGGCAAGAATGCTTGGCAGTTCTGGCAACCCGTCTTCCTAAAGATCTAAGAATTGAGCTGGAAGCAAAATATAAGGAATTCGAGATTATTTCAAGCTCCCAAAATTTTGATTTCCCTGCCAAATTATTGAAAGGAATTCTTGAAGCTCATCTTTTCTCCTGTCCTGACAATGAAAAAGGAGCCTTAGAACGACTAGTTGAACCTCTGATGAGTCTTGTAAAATCTTATGAGGGTGGAAGAGAGAGCCATGCCCATAAAATTGTTCAATCTCTTTTTGAAGAGTATCTCTCAGTCGAAGAACTGTTTAGTGATAATATACAGGCTGATGTAATTGAACGACTCCGTCTTCAATACAAGAAAGATTTGTTGAAGATTGTAGATATCGTGCTTTCTCATCAGGGTGTCAAGAGCAAAAATAAGTTGATACTGCGCCTAATGGATAAACTGGTTTACCCTAATCCTGCTGCCTATAGGGATCAATTAATCCGATTCTCCCAACTCAATCATATTGTTTATTCTGAGTTGGCCCTTAAGGCAAGTCAACTGCTTGAACAAACTAAACTGAGTGAACTTCGATCCAGCATTGCTAGAAGTCTTTCTGAACTAGAAATGTTTACTGAGGATGGTGAAAATATTGATACTCCGAAGAGGAAGGGTGCCATTAACGAACGAATGGAGGACCTTGTGAGCGCTCCTTTGGCAGTTGAAGATGCCCTTGTGGGCTTATTTGATCACAGTGATAACACCCTTCAAAGGAGGGTCGTGGAAACTTATATACGTAGGCTCTACCAGCCATATCTTGTCAAAGGCAGCATCAGGATGCAGTGGCACAGATCTGGCCTTATTGCTACTTGGGAGTTCTTAGAAGAGTACGTTGAACGGAAGAATGGGGTTGAAGACAAAACACTGGTGGAGAAACATAGTGAGAAGAAATGGGGAGTGATGGTCGTAATCAAATCTCTTCAATTTTTGCCAGCAATTATCAGTGCTGCATTGAGGGAAGCAACCAATAACTTCCATGATGCACTTAAAAGTGGTTCTGTCGACTCAAGTAACCATGGTAATATGATGCATATTGGACTAGTGGGCATCAACAACCAAATGAGTTTACTTCAAGACAGTGGTGATGAGGATCAGGCTCAAGAGAGAATCAATAAGTTGGCCAAAATACTCAGAGAGCAGGAAGTAGGGTCCATAATACATGCTGCCGGTGTTGGAGATATTAGTTGTATCATACAAAGGGATGAGGGGCGTGCTCCAATGAGGCATTCCTTCCACTGGTCAGCAGAAAAGCTATATTATGAAGAGGAACCCTTGTTGCGTCATCTGGAACCTCCGCTATCTATTTATCTTGAATTGGACAAACTTAAAGGCTATGAGAATATACGATATACACCATCCCGTGATCGTCAATGGCACCTCTACACCGTCGTGGATACCAAACCACAACCAATTCAAAGAATGTTTCTTCGAACACTTCTCAGGCAGCCAACCACAAATGAAGGATACTCTGCGTATCAAAGGGTAGATGCAGAAACATCTCGTACCCAATTGGATATGTCCTTTACTTCAAGGAGCATTTTTAGGTCCTTAATGGGTGCAATGGAGGAGTTGGAGCTTAACTCACACAATACCACCATCAAATCTGAACATGCTCATATGTACCTCTATGTCCTACGTGAGCAAGAAGTAGATGATCTTGTGCATTACTCCAAGAAAATTAACATAGATGCCGGTCAAGAAGAAACAACAGTAGAGACAATCTTGGAAGATTTGGCACAGGAAATCCATTCCTCTGTTGGTGTAAGAATGCATAGATTAGGGGTTTTTGTATGGGAAGTGAAGCTCTGGATTACTGCATGTGGACAGGCAAATGGTGCTTGGAGGGTCATTGTAAACAATGTTACTGGTCATACATCCACTGTACATATATATCGAGAAATGGAGGATGCGACCACTCATAAAGTGGTTTACAGTTCAGTCACAGTAAAGGGTCCACTGCATGGTGTACCAGTGAATGAAAACTATCAACCTTTGGGAGTTATTGACCGAAAACGTCTTGCAGCAAGAAAGAGTAGCACCACATACTGCTACGATTTTCCTCTTGCGTTTCAAACATCCTTGGAACAGTCATGGTCAAGTCAACAGACAGGAATTCAAAGAGCCAAAGATAAGGATCTCCTAAAAGTAACAGAGCTTAAATTTTCAGAGAAAGAAGGTAGCTGGGGTACTTCTCTTGTTCCTGCAGAGCGTCCTCCTGGACTCAATGATGTTGGCATGGTAGCCTGGTTGATGGAAATGTGTACTCCTGAATTCCCATCTGGAAGGACTATATTGGTTGTTTCGAACGATGTTACTTTCAAGGCTGGTTCTTTTGGTCCAAAAGAGGATGCCTTCTTCAGAGCAGTAACTGATCTTGCCTGTGCTAAGAAAATACCTTTAATTTATTTAGCAGCAAATTCTGGTGCCCGTTTAGGTGTAGCTGAAGAAGTCAAAACTTGTTTCAGAGTTGGCTGGTCTGAGGAATCTAAACCTGAGCAGGGTTTTCAGTATGTATATTTAACACCTGAGGACTATGCTCAAATTGGATCATCAGTGATGGCACATGAATTAAAGCTTGAAAGTGGAGAAACCAGATGGGTTATAGATACCATTGTCGGCAAAGAAGATGGACTGGGAGTTGAAAACTTGAGTGGCAGTGGGGCCATTGCCGGTGCCTATTCAAGGGCGTACAAGGAAACCTTTACATTGACATACGTGACTGGTAGGACTGTTGGAATCGGTGCTTATCTTGCTAGGCTTGGGATGAGGTGCATACAGAGGCTTGATCAGCCTATAATTCTTACCGGTTTTTCAGCATTAAATAAACTTCTTGGTAGGGAGGTGTACAGCTCTCACATGCAACTTGGTGGACCTAAAATCATGGCAACTAATGGAGTTGTTCATCTTACTGTTTCGGACGACCTTGAAGGTGTTTCTTCTATTTTGAATTGGCTTAGCTACATTCCTTCTCATGTAGGTGGTGCACTTCCCATTGTCAAATCCCTCGATCCCCCTGAGAGAGATGTGGAGTATTTACCGGAAAATTCATGTGATCCTCGTGCGGCCATATCTGGAACTCTGGATGTTAATGGAAAATGGCTTGGAGGCATTTTTGACAAGGACAGCTTTGTGGAGACACTAGAAGGCTGGGCAAGGACAGTTGTTACAGGAAGGGCCAAGCTTGGAGGAATCCCTGTGGGAATTGTTGCAGTAGAAACACAAACGGTTATGCAAATAATACCTGCTGATCCAGGCCAGCTTGATTCTCACGAGAGGGTTGTTCCTCAAGCCGGGCAAGTGTGGTTTCCTGATTCTGCGACCAAGACGGCCCAAGCGATATTGGATTTCAACAGAGAAGAGCTCCCGCTTTTCATTCTCGCAAACTGGAGAGGCTTTTCAGGTGGGCAAAGGGACCTTTTCGAAGGAATTCTTCAGGCTGGTTCAACTATTGTCGAGAACCTTAGAACATACAAACAGCCTATATTTGTGTACATCCCAATGATGGGTGAACTTCGTGGTGGGGCTTGGGTTGTTGTCGACAGTCGAATCAACTCAGATCACATTGAAATGTATGCCGAACGAACAGCTAAAGGTAATGTCCTTGAGCCAGAAGGAATGATTGAGATCAAATTTAGAACAAGAGAATTGTTGGAGTGTATGAGAAGACTTGATACACAGTTGATTACTCTGAAGGAAAAACTTTCGGAAGCCAAAAGTAACAAGGACTTTGGTACATATGATTCTGTGCAGCAACAGATTAGATTCCGCGAGAAACAACTTTTGCCTTTGTATACTCAGATAGCTACCAAATTTGCTGAACTGCATGATACTTCCTTAAGAATGGCTGCAAAGGGTGTAATCAGAGAAGTTCTTGATTGGCGTAACTCACGTTCTGTCTTCTATCGGAGACTACACAGAAGAATCGGTGAGCACTCACTGATCAACAGTGTGAGAGATGCTGCTGGTGACCAATTGTCACATGTATCTGCCATGAACTTGCTCAAAGACTGGTACCTGAAATCTGATGTTGCCAAAGGTAGAGAAGAAGCTTGGTTGGACGATGAAGCATTCTTCAGATGGAGGGATGATCCTGCAAATTACGAGGATAAACTAAAGGAATTGCGCGTCCAGAGACTGTTGCTTCAGTTGACAAATATTGGTGACTCGGCACTTGATTTACAAGCTCTACCTCAAGGTCTTGCCGCACTTTTAAGCAAGTTGGAAGCATCAAGTCGCGATAAGTTGACTAATGAACTTCGCAAGGTCCTCGGTTAG 6771 0.4349 MASAGHGNGHINGVVPNRHTATISEVDEFCNALGGNRPIHSILIANNGMAAVKFIRSVRSWAYETFGTEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVEIAEITHVDAVWPGWGHASENPELPDALKAKGIVFLGPPAVSMGALGDKIGSSLIAQAADVPTLPWSGSHVKIPPESSLITIPDEIYRAACVYTTDEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLICDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPPETVKELEQAARRLAISVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEINLPAAQVAVGMGIPLWQIPEIRRFYGKEHGGGNDAWRKTSVLATPFDFDKAQSTKPKGHCVAVRVTSEDPDDGFKPTGGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLNASDYRDNKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKATASSAALVSDYVGYLEKGQIPPKHISLVHSQVSLSIEGSKYTIDMIRGGPGSYKLKLNQSVIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLIGETPCKLLRYLVADDSHIDADTPYAEVEVMKMCMPLLSPASGIIHFRMAEGQAMQAGELIARLDLDDPSAVRKAEPFTGSFPILGPPTAISGKVHQKCAASLNAARMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECLAVLATRLPKDLRIELEAKYKEFEIISSSQNFDFPAKLLKGILEAHLFSCPDNEKGALERLVEPLMSLVKSYEGGRESHAHKIVQSLFEEYLSVEELFSDNIQADVIERLRLQYKKDLLKIVDIVLSHQGVKSKNKLILRLMDKLVYPNPAAYRDQLIRFSQLNHIVYSELALKASQLLEQTKLSELRSSIARSLSELEMFTEDGENIDTPKRKGAINERMEDLVSAPLAVEDALVGLFDHSDNTLQRRVVETYIRRLYQPYLVKGSIRMQWHRSGLIATWEFLEEYVERKNGVEDKTLVEKHSEKKWGVMVVIKSLQFLPAIISAALREATNNFHDALKSGSVDSSNHGNMMHIGLVGINNQMSLLQDSGDEDQAQERINKLAKILREQEVGSIIHAAGVGDISCIIQRDEGRAPMRHSFHWSAEKLYYEEEPLLRHLEPPLSIYLELDKLKGYENIRYTPSRDRQWHLYTVVDTKPQPIQRMFLRTLLRQPTTNEGYSAYQRVDAETSRTQLDMSFTSRSIFRSLMGAMEELELNSHNTTIKSEHAHMYLYVLREQEVDDLVHYSKKINIDAGQEETTVETILEDLAQEIHSSVGVRMHRLGVFVWEVKLWITACGQANGAWRVIVNNVTGHTSTVHIYREMEDATTHKVVYSSVTVKGPLHGVPVNENYQPLGVIDRKRLAARKSSTTYCYDFPLAFQTSLEQSWSSQQTGIQRAKDKDLLKVTELKFSEKEGSWGTSLVPAERPPGLNDVGMVAWLMEMCTPEFPSGRTILVVSNDVTFKAGSFGPKEDAFFRAVTDLACAKKIPLIYLAANSGARLGVAEEVKTCFRVGWSEESKPEQGFQYVYLTPEDYAQIGSSVMAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSSILNWLSYIPSHVGGALPIVKSLDPPERDVEYLPENSCDPRAAISGTLDVNGKWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFILANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDHIEMYAERTAKGNVLEPEGMIEIKFRTRELLECMRRLDTQLITLKEKLSEAKSNKDFGTYDSVQQQIRFREKQLLPLYTQIATKFAELHDTSLRMAAKGVIREVLDWRNSRSVFYRRLHRRIGEHSLINSVRDAAGDQLSHVSAMNLLKDWYLKSDVAKGREEAWLDDEAFFRWRDDPANYEDKLKELRVQRLLLQLTNIGDSALDLQALPQGLAALLSKLEASSRDKLTNELRKVLG 2256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04487 2256 Gene3D Biotin dependent carboxylase carboxyltransferase 1644 1708 - -
Vivi3g04487 2256 FunFam acetyl-CoA carboxylase isoform X2 10 163 - -
Vivi3g04487 2256 ProSitePatterns Carbamoyl-phosphate synthase subdomain signature 2. 352 359 IPR005479 GO:0005524
Vivi3g04487 2256 Pfam Acetyl-CoA carboxylase, central region 746 1486 IPR013537 GO:0003989|GO:0005524|GO:0006633
Vivi3g04487 2256 Gene3D - 676 747 - -
Vivi3g04487 2256 Gene3D - 206 268 IPR013815 GO:0005524
Vivi3g04487 2256 Pfam Biotin-requiring enzyme 689 745 IPR000089 -
Vivi3g04487 2256 Coils Coil 2052 2072 - -
Vivi3g04487 2256 Gene3D - 1826 2225 - -
Vivi3g04487 2256 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 162 399 - -
Vivi3g04487 2256 FunFam acetyl-CoA carboxylase isoform X2 1826 2225 - -
Vivi3g04487 2256 SUPERFAMILY ClpP/crotonase 1827 2216 IPR029045 -
Vivi3g04487 2256 Pfam Carbamoyl-phosphate synthase L chain, ATP binding domain 206 388 IPR005479 GO:0005524
Vivi3g04487 2256 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1493 1832 IPR011762 -
Vivi3g04487 2256 Pfam Biotin carboxylase, N-terminal domain 39 158 IPR005481 -
Vivi3g04487 2256 FunFam Acetyl-CoA carboxylase 1 676 747 - -
Vivi3g04487 2256 FunFam acetyl-CoA carboxylase 1-like 269 527 - -
Vivi3g04487 2256 Pfam Biotin carboxylase C-terminal domain 435 541 IPR005482 -
Vivi3g04487 2256 SUPERFAMILY Single hybrid motif 678 748 IPR011053 -
Vivi3g04487 2256 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. 1836 2151 IPR011763 GO:0016874
Vivi3g04487 2256 Gene3D - 269 527 - -
Vivi3g04487 2256 SUPERFAMILY ClpP/crotonase 1496 1822 IPR029045 -
Vivi3g04487 2256 Pfam Carboxyl transferase domain 1588 2140 IPR034733 -
Vivi3g04487 2256 FunFam acetyl-CoA carboxylase isoform X1 192 267 - -
Vivi3g04487 2256 Gene3D - 164 204 - -
Vivi3g04487 2256 Gene3D - 1494 1821 - -
Vivi3g04487 2256 CDD biotinyl_domain 686 745 - -
Vivi3g04487 2256 ProSiteProfiles Biotin carboxylation domain profile. 38 545 IPR011764 -
Vivi3g04487 2256 ProSiteProfiles ATP-grasp fold profile. 191 383 IPR011761 GO:0005524|GO:0046872
Vivi3g04487 2256 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 9 2254 - -
Vivi3g04487 2256 Gene3D - 8 163 - -
Vivi3g04487 2256 ProSiteProfiles Biotinyl/lipoyl domain profile. 672 746 IPR000089 -
Vivi3g04487 2256 SUPERFAMILY PreATP-grasp domain 18 160 IPR016185 -
Vivi3g04487 2256 ProSitePatterns Biotin-requiring enzymes attachment site. 703 720 IPR001882 -
Vivi3g04487 2256 SUPERFAMILY Rudiment single hybrid motif 429 542 IPR011054 -
Vivi3g04487 2256 SMART Biotin_carb_C_2 434 541 IPR005482 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04487 Vivi-Chr3 80987049 80998661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04487 4 2256 Acyl Lipid Metabolism Gene Families AT1G36160 80.044 0.0 3798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04487 K11262 - gmx:100778658 4122.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04487 3 80987049 80998661 Vivi3g04487 3 80987049 80998661 ECH