Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04486 ATGGCCATGGCTATAACTTCTTTCCGCATCATGTTTCGTCACATATTACATACCAACACCTACATCTCTTTCTTCCCTCCACCACCACAACCCACGGCTTTACTTATCAACCGTCGCGCCACGTGGCGGCACTGTCTTCTCTCAACCAATTATCACAGTTACAAGGTTGTCGAGAAGAAAGACGAACGCTTAGTTGAGAATAACAATACCGATGTTGTAAACTCGACAACAATTGCAGCCATTGTAACCTCGTTAGGCGGTCCACCTGCCGCTGTAGGAATCGTCCGGCTTTCGGGTCCTCACGCGGTTTCTATCGCCGGTCGAGTTTTCCGACCCGTTAGGAACAAGTGGCAGCCTACTAGTCATGTTGTTGAATACGGTGTCGTTATGGATTCCGACGGAAATGTCGTCGACGAGGTTTTAGCTGTCCCGATGCTAGCACCGAGATCGTATACACGGGAAGATGTGGTTGAACTTCAATGTCATGGGAATGAGGTTTGTTTGCGTCGTGTGCTTAGGACTTGTTTGGAAGCTGGAGCAACACTTGCTCAGCCAGGAGAGTTTACTCTTCGAGCTTTTCTAAATGGTCGTTTGGATCTCACACAAGCTGAAAATGTTGGGAAATTGATTGCGGCCAAATCTGTGGCTGCCGCCGATGCTGCGCTGGAAGGAATCCAGGGTGGTTTCTCATCTCTTGTCAGATCATTGAGAAGCCGGTGCATTGACTTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGAAGATGAGATGCCGCCTATAGATTTGAATGGGATTATGGATAAAATACAACATATGTCACAAGATGTTGAGAATGCGTTGGAAACAGCAAATTATGACAAGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCTAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACCACTCGAGATGTGATTGAAGCAAGTATTAACATCAACGGCATCCCCATAACCCTTCTTGATACTGCAGGCATTAGGGACACCAATGACATTGTGGAAAAAATAGGTGTAGAGCGGTCCGAAGCTGTTGCTAGAGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTGCTAAGGATTCAACTGGATCTTCCACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTGAGCCTTGTGCTGAGACTGAATGGGACAAAGGATGTTACAGTCACAAAATATTCAGCAAACAAGTGTTTACATCTGCTGTAACCAGTCAAGGATTACAAGACTTAGAGACGGCGGTTTTAGAGATTGTAGGCATGGATGGCATTGCTGCTGGGGGTCGCAGATGGACCGTCAATCAGAGACAATGTGAACAACTTGTTCGAACGAAGGAAGCGCTTACGAGGTTACAATCATCAATAAAGGAGGAACTACCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGCGGAGAAGATATATCAGAGGAGGTTTTATCAAATATATTTAGCAAGTTCTGTATTGGTAAATAG 1626 0.4502 MAMAITSFRIMFRHILHTNTYISFFPPPPQPTALLINRRATWRHCLLSTNYHSYKVVEKKDERLVENNNTDVVNSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPVRNKWQPTSHVVEYGVVMDSDGNVVDEVLAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLTQAENVGKLIAAKSVAAADAALEGIQGGFSSLVRSLRSRCIDLLTEIEARLDFEDEMPPIDLNGIMDKIQHMSQDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASININGIPITLLDTAGIRDTNDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKDSTGSSTPVILVVNKIDCEPCAETEWDKGCYSHKIFSKQVFTSAVTSQGLQDLETAVLEIVGMDGIAAGGRRWTVNQRQCEQLVRTKEALTRLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFSKFCIGK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04486 541 NCBIfam small GTP-binding protein domain 293 451 IPR005225 GO:0005525
Vivi3g04486 541 CDD TrmE_N 77 196 IPR018948 -
Vivi3g04486 541 Gene3D - 293 469 IPR027417 -
Vivi3g04486 541 FunFam tRNA modification GTPase MnmE 72 197 - -
Vivi3g04486 541 Gene3D Probable tRNA modification gtpase trme; domain 1 62 197 IPR027266 GO:0005515
Vivi3g04486 541 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 292 462 IPR031168 -
Vivi3g04486 541 Pfam GTP-binding protein TrmE N-terminus 77 197 IPR018948 -
Vivi3g04486 541 PRINTS Transforming protein P21 ras signature 405 418 - -
Vivi3g04486 541 PRINTS Transforming protein P21 ras signature 293 314 - -
Vivi3g04486 541 PRINTS Transforming protein P21 ras signature 333 355 - -
Vivi3g04486 541 PANTHER TRNA MODIFICATION GTPASE GTPBP3 67 541 - -
Vivi3g04486 541 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 90 541 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vivi3g04486 541 Pfam 50S ribosome-binding GTPase 294 415 IPR006073 GO:0005525
Vivi3g04486 541 CDD trmE 290 462 IPR031168 -
Vivi3g04486 541 Gene3D tRNA modification GTPase MnmE domain 2 198 541 IPR027368 -
Vivi3g04486 541 Pfam MnmE helical domain 200 538 IPR025867 -
Vivi3g04486 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 457 IPR027417 -
Vivi3g04486 541 FunFam tRNA modification GTPase MnmE 293 469 - -
Vivi3g04486 541 Hamap tRNA modification GTPase MnmE [mnmE]. 76 541 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04486 Vivi-Chr3 80980562 80984658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04486 K03650 - gmx:100818096 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04486 3 80980562 80984658 Vivi3g04486 3 80980562 80984658 ECH