Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04474 ATGGCTACTTCTCTCTCGAATCAAATTCTACTAGGTTGTTCATGTTCTTCTACTTCATTCTCTTCCAAATCTCGTCAAAAACCCAATTTCGCACGCTTTCCATCTCGCCCCTTTTCCGCCTCCAACACTGTCTTAGGGTTTCCAGCCCCCTTTTCCTCTCTCCATCCAACCTCACTCTTCGCTTCTTCCCAAATAAATAACGAAACAGAAGAGATTCAAATTGATGAAGATAGAAAAACTTTACCCAGCTTAGCGATTCTTATTGAATCATACAAGAAAGCCTTTCTTACCGGCAACGAAAAGATTGCATCAGAGATTGAAGGAACAATACAATTAAAGCAGAATGAAAAGGTTAAATTGGTTCAGAAAGTATCTACTCTATCGGATGATAAGGTTTCGGTTAAGGAGCAATATCTTCGCTTACAAGCGGATTTTGATAACTTTAGGAAAAGATTTGACAAGGAAAGAGTTGGGATTCGATCGGATGCGCAACAGGGGTTCATTAAGAAGCTTTTGTTGATGGCGGATAGTTTTGAGAGAGTTAAGCGACAAATTGAAGTGGCGACGGAGAAAGAGAAGAAGATTGATGTGAGTTATCAGAGTATTTATAAGCAGTTTGTTGAGACTTTGAGGAGTCATCAGGTTTCTGTTGTAGCAACCGTTGGCAAGCCTTTTAATCCGTTGCTACATGAAGCCATTGGACGTGAGGAGTCCGAAGTGTTCAAGGAAGGGATTATAATTAAAGAATCCCGACGAGGTTTTGTGCTTAAAGATAAGGTTTTAAGGCCAGCATTTGTGAAGGTTTCCTCAGGTCCTGGGAATAAGAAATCTTCAGTGACACCTGCCAAGTCCGTGGAGCAGCCTTCAACAGCAGCTAGAATTGATGAAAGATAA 894 0.4094 MATSLSNQILLGCSCSSTSFSSKSRQKPNFARFPSRPFSASNTVLGFPAPFSSLHPTSLFASSQINNETEEIQIDEDRKTLPSLAILIESYKKAFLTGNEKIASEIEGTIQLKQNEKVKLVQKVSTLSDDKVSVKEQYLRLQADFDNFRKRFDKERVGIRSDAQQGFIKKLLLMADSFERVKRQIEVATEKEKKIDVSYQSIYKQFVETLRSHQVSVVATVGKPFNPLLHEAIGREESEVFKEGIIIKESRRGFVLKDKVLRPAFVKVSSGPGNKKSSVTPAKSVEQPSTAARIDER 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04474 297 Gene3D - 97 211 IPR013805 -
Vivi3g04474 297 MobiDBLite consensus disorder prediction 269 297 - -
Vivi3g04474 297 ProSitePatterns grpE protein signature. 225 268 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 Hamap Protein GrpE [grpE]. 67 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 216 271 IPR009012 GO:0006457
Vivi3g04474 297 PRINTS GrpE protein signature 249 268 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 PRINTS GrpE protein signature 222 237 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 PRINTS GrpE protein signature 139 155 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 PRINTS GrpE protein signature 167 182 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 CDD GrpE 135 268 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 PANTHER GRPE PROTEIN 61 271 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 FunFam Protein GrpE 214 269 - -
Vivi3g04474 297 Pfam GrpE 111 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vivi3g04474 297 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 120 213 IPR013805 -
Vivi3g04474 297 Gene3D Head domain of nucleotide exchange factor GrpE 214 269 IPR009012 GO:0006457
Vivi3g04474 297 MobiDBLite consensus disorder prediction 271 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04474 Vivi-Chr3 80505867 80508612 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04474 K03687 - gmx:100809893 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04474 3 80505867 80508612 Vivi3g04474 3 80505867 80508612 ECH