Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04451 ATGGGTTCGGTTTTTAGTGTGGCGAGGGCGAGTAATAACGATTCGGATAAACGTGAGTGGGATGGAGATGGAGTCTCTGCAAATGATACATGTAAGAGACAAAGAATGTCGTTGCCTACGGTTGACGAAGAGAATCCAAGACTATTCCCGAATCTTCCTGACGAGGTATCGATTCAAATTATTGCTAGAGTTCCGAGAATTTGTTATTTCAGTGTAAGGTTGGTGTCGAGGAAGTGGAAATCGACTATTATGAGTTCGGAGCTATATAAGATAAGAAAAGAACTAGGGTCGACGGAAGAGTGGCTATATATGTTGGTTAAGGTAGGAGAAAATAAGCTTTTGTGGCATGCTGTAGATCCTCGGTCTCGGATATGGCAGAGACTGCCTACTATGCCTAGTGTTGTTGATGAAGAGGAATCTAGAAAGGGTTCTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGGTATGAGAATTGCTGAAGTTATTAGAGGCTTTTTTGGACAGAAGGATTCGTTTGATGAAATGCCGTTTTGTGGTTGTGCTATTGGAGCTGTTGGTGGATGTCTCTATGTTTTAGGTGGATTCTCGAAAGCTTCGACTATGAGATGTGTCTGGCGATTCGATCCGATACAAAATACGTGGAGCGAGGTGACTTCAATGTCCACAGGTCGGGCATATTGTAAGACAGGAATCTTAAACAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTTCAGCTGGATTGCTACCTCTTCAATCTGCTGAAGTTTTCGATCCTTCGACAGGTACATGGTCAGATGTACCTAGTATGCCATTCTCAAGAGCTCAGGTCCTTCCCAACGCCTTCTTGGCCGACATGTTAAAGCCGATTGCCACGGGGTTGACACCATACATGGGAAGGTTATGTGTTCCGCAGAGTTTGTATTCTTGGCCCTTTTTTGTCGATGTTGGTGGAGAAATCTACGATCCTGAAACAAACTCGTGGATAGAAATGCCAACTGGAATGGGCGAGGGTTGGCCCGCACGGCAAGCAGGTACAAAATTAAGCGTCGTAGTGGACGGCGAATTATACGCTTTTGATCCTTCTAATACTATGGACAGTGGAAGAATCAAGGTATATGATCAACGAGAAGACGCTTGGAAAGTTGTTATCGGAAAAGTCCCTATATATGGTTCCGATGATTCGGAGTCTCCTTATCTACTTGCTGGTTTCCACGGAAAACTTCATGTCATCACGAAAGACGCCAATCATAATATTTCTGTTCTTCAAGCTGAGCTCCGCAATAATTTACATTCTTCACCGTCGTCGCCTTCCTCGAGTCTGTCACAAAGTTCCGTGCATGAATTCGTGGACCCGCCAGTCGAAACCGATGCAGTTATTTGGAAAATGATTGCAAGTAGGTGTTTGGGACAGGCGGAACTAGTTAGTTGCCAAGTTATTGACATGTAG 1455 0.4433 MGSVFSVARASNNDSDKREWDGDGVSANDTCKRQRMSLPTVDEENPRLFPNLPDEVSIQIIARVPRICYFSVRLVSRKWKSTIMSSELYKIRKELGSTEEWLYMLVKVGENKLLWHAVDPRSRIWQRLPTMPSVVDEEESRKGSSSRLWMWNMVEGMRIAEVIRGFFGQKDSFDEMPFCGCAIGAVGGCLYVLGGFSKASTMRCVWRFDPIQNTWSEVTSMSTGRAYCKTGILNNKLYVVGGVSQGSAGLLPLQSAEVFDPSTGTWSDVPSMPFSRAQVLPNAFLADMLKPIATGLTPYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPTGMGEGWPARQAGTKLSVVVDGELYAFDPSNTMDSGRIKVYDQREDAWKVVIGKVPIYGSDDSESPYLLAGFHGKLHVITKDANHNISVLQAELRNNLHSSPSSPSSSLSQSSVHEFVDPPVETDAVIWKMIASRCLGQAELVSCQVIDM 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04451 484 Pfam F-box domain 49 89 IPR001810 GO:0005515
Vivi3g04451 484 Gene3D - 114 391 IPR015915 GO:0005515
Vivi3g04451 484 ProSiteProfiles F-box domain profile. 46 92 IPR001810 GO:0005515
Vivi3g04451 484 SUPERFAMILY F-box domain 46 92 IPR036047 GO:0005515
Vivi3g04451 484 PANTHER OS02G0202900 PROTEIN 36 482 IPR045887 -
Vivi3g04451 484 MobiDBLite consensus disorder prediction 1 28 - -
Vivi3g04451 484 MobiDBLite consensus disorder prediction 12 28 - -
Vivi3g04451 484 SMART kelc_smart 236 282 IPR006652 GO:0005515
Vivi3g04451 484 SMART kelc_smart 189 235 IPR006652 GO:0005515
Vivi3g04451 484 Pfam Kelch motif 225 273 IPR006652 GO:0005515
Vivi3g04451 484 Pfam Kelch motif 177 222 IPR006652 GO:0005515
Vivi3g04451 484 SUPERFAMILY Kelch motif 109 413 IPR015915 GO:0005515
Vivi3g04451 484 SMART fbox_2 52 92 IPR001810 GO:0005515
Vivi3g04451 484 CDD F-box_AtAFR-like 48 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04451 Vivi-Chr3 80112851 80115436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04451 42 271 Miscellaneous Gene Families AT4G33900 27.778 2.03e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04451 - - vvo:131662022 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04451 3 80112851 80115436 Vivi3g04451 3 80112851 80115436 ECH