Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04407 ATGGAAGAAACCTCTGTTGTTTTCCACTGGAGCGTTATCAGATCTATGTTATCTATCCTTCAATGGTGGACTTTCAATGTCACCGTTATCATCGTTAACAAGTGGATCTTCCAGAAATTGGATTTCAAGTTTCCCCTGACAGTATCCTGTGTCCACTTTATCTGCTCAGCCATTGGAGCATATGTGGTAATTAAGGTGCTGAAGCTTAAACCATTGATAACTGTTGACCCTGAAGATCGCTGGAAAAGAATCTTACCTATGTCATTTGTGTTCTGTATTAACATAGTGCTGGGTAATGTGAGCCTACGATACATTCCAGTTTCTTTTATGCAGACAATAAAATCATTCACACCTGCAACCACAGTTGTTTTGCAATGGCTAGTGTGGAGGAAGTATTTTGACTGGCGTATTTGGGCTTCTCTTATACCCATTGTTGGAGGGATTCTTCTCACATCTGTAACAGAGATGAGCTTTAATATGTTTGGATTTTGTGCTGCCTTACTTGGCTGTTTGGCTACATCTACAAAGACCATCCTTGCAGAATCTCTTCTGCACGGATACAAGTTTGACAGTATAAACACGGTTTACTACATGGCACCTTATGCAACCATGATCTTGGTGCTTCCTGCCACATTACTTGAAGGCAATGGAGTTCTGGAATGGCTTAATACGCATCCATATCCTTGGTCGGCCCTCATCATTATTTTCAGTTCTGGGGTGTTGGCTTTCTGTCTTAACTTCTCCATTTTTTACGTGATCCACTCCACCACTGCTGTAACATTTAACGTTGCTGGGAATCTTAAGGTTGCTGTTGCTGTCCTTGTTTCTTGGCTGATATTTAGGAACCCAATTTCATATTTCAATGCCGTTGGCTGTGCCGTCACTCTTGTGGGTTGTACATTCTATGGTTATGTCAGGCACTTGCTCTCCCAACAGCCACCCGTTCCAGGAACTCCTCGGACACCAAGGACCCCTCGGAGTAAGATGGAGTTGCTTCCACTTGTAAATGATAAATTAGAAAACAAGTTCTAA 1032 0.4225 MEETSVVFHWSVIRSMLSILQWWTFNVTVIIVNKWIFQKLDFKFPLTVSCVHFICSAIGAYVVIKVLKLKPLITVDPEDRWKRILPMSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLIPIVGGILLTSVTEMSFNMFGFCAALLGCLATSTKTILAESLLHGYKFDSINTVYYMAPYATMILVLPATLLEGNGVLEWLNTHPYPWSALIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISYFNAVGCAVTLVGCTFYGYVRHLLSQQPPVPGTPRTPRTPRSKMELLPLVNDKLENKF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04407 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 301 - -
Vivi3g04407 343 Gene3D - 48 158 - -
Vivi3g04407 343 SUPERFAMILY Multidrug resistance efflux transporter EmrE 68 153 - -
Vivi3g04407 343 Pfam Triose-phosphate Transporter family 17 302 IPR004853 -
Vivi3g04407 343 PANTHER SOLUTE CARRIER FAMILY 35 17 306 - -
Vivi3g04407 343 FunFam UDP-galactose transporter 1-like 48 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04407 Vivi-Chr3 79319176 79325361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04407 11 342 Organic Solute Cotransporters AT1G77610 88.889 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04407 K26222 - gmx:100809511 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04407 3 79319176 79325361 Vivi3g04407 3 79319176 79325361 ECH