Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04399 ATGTTATGCGGCGTCGTCAGCACTTCCTTCACTTCCATCTTACCCAGAAATAAACAATCCTATCTACCCAAATCAATCTCATGTTCCCTCCCAGTGGTTGAGCATAAAGCAACGAATGTTGCTGAGCCGCTTTTGCTTAATGCGGTTCGAGGAGTAGAGGTTGATAGACCCCCGGTTTGGCTCATGAGACAAGCCGGGAGGTACATGAAGAGTTACCAAGCTATATGTGAGAAACATCCTTCGTTCCGCGAAAGATCTGAAAATGTTGATCTTGTGGTGGAGATTTCACTGCAGCCGTGGAAGGTTTTCAAGCCGGATGGGGTAATTTTGTTCTCGGATATTCTTACCCCACTTTCTGGGATGAATATTCCGTTCGATATCGTGAAAGGGAAGGGTCCGGTGATATTTGATCCTGTTTATTCAGCCGGGCAAGTTGATCAAGTGAGGGAGTTTATTCCTGAAGAATCAGTTCCATATGTCGGTGAAGCACTAAGTATTTTGAGGAAAGAGGTGGATAACAAAGCTGCGGTCCTTGGTTTTGTGGGAGCTCCTTTCACCTTGGCATCGTACGTGGTTGAAGGTGGTTCATCGAAGCACTTCTCAAAAATAAAGAGATTGGCTTTCTCTGAACCAAAGATTCTTCACTCATTACTGCAGAAATTCACGACATCCATGGCTCGATACATCCAATACCAAGCGGATAATGGAGCTCAAGCGGTTCAGATCTTTGATTCATGGGCAACAGAGCTTAGTCCAGTAGATTTCGAACAATTCAGTTTGCCTTACTTAAAGCAGATTATTGACACCGTGAAGAAAAGCCATCCAGAACTCCCTCTTATCCTCTATGCGAGTGGATCAGGAGGTTTGCTCGAGCGAATAGCCGCGACCGGTGTGGATGTAGTTAGCTTGGATTGGACTGTTGATATGGCCGATGGTAGAAGGCGTTTGGGACCAAATGTAGCTATTCAAGGTAATGTTGACCCTGGTGTTCTTTTTGGCTCAAAAGAGCTTATCACTGATAGGATTTATGATACTGTGAAAAAAGCTGGTATAGGGAAACATATATTGAATCTAGGTCATGGTATTGTAGTCGGTACACCTGAGGAGAATGTAGCACATTTTTTCGAGGTTGCCAAAGGAGTACGATACTAA 1152 0.4436 MLCGVVSTSFTSILPRNKQSYLPKSISCSLPVVEHKATNVAEPLLLNAVRGVEVDRPPVWLMRQAGRYMKSYQAICEKHPSFRERSENVDLVVEISLQPWKVFKPDGVILFSDILTPLSGMNIPFDIVKGKGPVIFDPVYSAGQVDQVREFIPEESVPYVGEALSILRKEVDNKAAVLGFVGAPFTLASYVVEGGSSKHFSKIKRLAFSEPKILHSLLQKFTTSMARYIQYQADNGAQAVQIFDSWATELSPVDFEQFSLPYLKQIIDTVKKSHPELPLILYASGSGGLLERIAATGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKELITDRIYDTVKKAGIGKHILNLGHGIVVGTPEENVAHFFEVAKGVRY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04399 383 CDD URO-D 46 379 IPR006361 GO:0004853|GO:0006779
Vivi3g04399 383 Pfam Uroporphyrinogen decarboxylase (URO-D) 44 379 IPR000257 GO:0004853|GO:0006779
Vivi3g04399 383 FunFam Uroporphyrinogen decarboxylase 34 383 - -
Vivi3g04399 383 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 178 194 IPR000257 GO:0004853|GO:0006779
Vivi3g04399 383 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 58 67 IPR000257 GO:0004853|GO:0006779
Vivi3g04399 383 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 39 383 - -
Vivi3g04399 383 NCBIfam uroporphyrinogen decarboxylase 45 379 IPR006361 GO:0004853|GO:0006779
Vivi3g04399 383 Hamap Uroporphyrinogen decarboxylase [hemE]. 42 382 IPR006361 GO:0004853|GO:0006779
Vivi3g04399 383 Gene3D - 31 383 IPR038071 -
Vivi3g04399 383 SUPERFAMILY UROD/MetE-like 44 382 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04399 Vivi-Chr3 79215793 79218637 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04399 K01599 - gmx:100800753 660.218