Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04387 ATGATTCCGGTTGATAATGGTATTACAAGTCCCCGAAATGAAATTGAAGAATCTAATGGGAGTCAAGTGAAGGAGTTTGCTTCTCTAGATATTTCAACCCCTAATGAGAAAGACCTTATTTCACAGCCTGTAGCTTCTCCGAATTCCAACAATGGACTAAAATCGCGTCTCCGTACGATGTTTTCTAAGAAAGTTGATTGGAATTCAGTCAAGAAAATGTGCATGGAATGGATCAAAAACCCGGTGAACATGGCCCTTTTCGCGTGGGTAGTTTGCGTCGCTGTTTCGGGTGCGATTCTGTTCTTAGTCATGACAGGAATGTTGAATAATGTGCTGAAAACTAAGTCGGAGAGGAATACATGGTTTGAGATAAATAACCAGATATTAAATGCACTCTTTACGCTTATGTGTTTGTATCAACATCCAAAGAGGTTCCACCAGCTTGTTCTTTTGTGTAGATGGAGAACAAATGACATATCTAGACTTAGAATGATTTACTGCAAAAATGGTACTGGATACACAAGGTCTCAGCGACCTGCAGTTGGAGTTGGAATTACTATATCGGTTGCAATTGTGACACCGGCCATAGCTGGATTGTACATTATTCTTAGTCCACTTGGGAAGGACTATGATTGTGAGAGGGATGAAGAATCACAAGAGAAAGTTACAAAACCGTTTGAGAAAAAGTATGCATTTGTTTCTAAAGATCAACAAGGAGAAGTTATAGAATTAGAAAATAGACCGAATTGGAGGGGAGGAATATTTGAAATATGGCATGATATATCTGTATCATTTCTCTCACTTTTCTGCAGTTTCTGTGAGTTTGGTTGGAACATGGAGAGACTTGGATTTGGGAACATGTATGTGCATATAGCTACTTTTATGCTGTTATGTATGGCTCCTTTTTGGGTATTTGTATTGGCTTCTGGTAACATTGATGATGATAATGTTAGAATAGCTTTAATAGCTGTTGGAATCATCCTTTGTTTTTGTGGTTTACTCTATGGTGGCTTTTGGAGGATACAAATGCGAAAGAGGTTCAATTTGCCTGCATATGATTTCTGTTTTGGAAAACCATCGGCTTCTGATTGCGCACTTTGGTTATGCTGTTGTTGGTGTTCTCTTGCTCAAGAAGTTAGGACTGGGAATAGTTATGATATCTTGGAAGATAAGTTATGTTTGAAATCAATTGATACTTGTGATCAAGTTTCAATTTCAAATTTGGATAGAGAAGATGTAGTAGTATCAACCAAATCTGGCTCAAGTATTACTCTTGAAGGAGGTAAAGATGGAACAATGACTCCACCAACTCCATCATTAATACAAAAAGAAGATTGTTAG 1341 0.3781 MIPVDNGITSPRNEIEESNGSQVKEFASLDISTPNEKDLISQPVASPNSNNGLKSRLRTMFSKKVDWNSVKKMCMEWIKNPVNMALFAWVVCVAVSGAILFLVMTGMLNNVLKTKSERNTWFEINNQILNALFTLMCLYQHPKRFHQLVLLCRWRTNDISRLRMIYCKNGTGYTRSQRPAVGVGITISVAIVTPAIAGLYIILSPLGKDYDCERDEESQEKVTKPFEKKYAFVSKDQQGEVIELENRPNWRGGIFEIWHDISVSFLSLFCSFCEFGWNMERLGFGNMYVHIATFMLLCMAPFWVFVLASGNIDDDNVRIALIAVGIILCFCGLLYGGFWRIQMRKRFNLPAYDFCFGKPSASDCALWLCCCWCSLAQEVRTGNSYDILEDKLCLKSIDTCDQVSISNLDREDVVVSTKSGSSITLEGGKDGTMTPPTPSLIQKEDC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04387 446 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g04387 446 Pfam PLAC8 family 250 380 IPR006461 -
Vivi3g04387 446 Pfam Protein of unknown function (DUF2985) 76 154 IPR021369 -
Vivi3g04387 446 NCBIfam uncharacterized Cys-rich domain 249 381 IPR006461 -
Vivi3g04387 446 MobiDBLite consensus disorder prediction 419 438 - -
Vivi3g04387 446 PANTHER PLAC8 FAMILY PROTEIN-RELATED 172 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04387 Vivi-Chr3 78938923 78941269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04387 - - tpra:123894848 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04387 3 78938923 78941269 Vivi7g02223 7 85098650 85101297 ECH
Vivi3g04387 3 78938923 78941269 Vivi3g04387 3 78938923 78941269 ECH
Vivi3g04387 3 78938923 78941269 Vivi7g02223 7 85098650 85101297 PCT