Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04305 ATGACTTCCAAACCAAAAAAACAAACTTACAGCGTCTGTTTTTGCTGCCGGCGCCGATTCAAACTCGGCGTATCAGAAGCACCGCCGCAGATAAAGGAACTCTATGACAATTACTCCGATGAGAACGCCATCATGACCGCATCTCATCTTCAAAGGTTCCTCGTCGAGGTGCAGGGAGATAAGAACTTCACAGAGAATGAAGCACAATCCATCATCGACGGTCATAAGCATTTGAGTATCTTCCATCGAAGAGGTCTCAATCTCGAAAGCTTCTTCAAGTTTCTCTTCAGTGATAATAACCCTCCCCTCTTACCTTCTCGCGGGGTGCATCAAGATATGAGTTTACCGTTGTCTCATTATTACATACACACTGGTCATAATTCCTATCTTACTGGAAATCAGCTTAGTAGTGATTGCAGTGATGCTCCTATCATCCTTGCGCTTCAGAGAGGGGTTAGGGTTATTGAGTTGGATATATGGCCTAATGGATCTAAGGATGATATTGAAGTTCTTCATGGAAGGACATTGACTACTCCTGTCGCGCTTATCAAATGTTTGAGGTCTATTAAGGAGCATGCGTTCGTGGCGTCGGAGTATCCGGTTGTGATAACATTAGAAGACCATCTTACTCCTGATCTTCAGGCCAAAGTGGCTCAGATGGTTACTCAAACATTTGGAGACATACTATTTTGTCCGAGCTCGGAAAGCTTGAAGGAATTTCCTTCGCCCGACTCGCTCAAAAAGAGGATTATCATATCAACAAAACCACCTAAAGAGTACCTTGAGGCAAAAGAAGGCCAGGAAAAAGAGGAATCAGTTAAGGGAAAGTCTTTAGGTGATGAAGAAGCTTGGGGCAAAGAAGTCCCTAGTTTGAGAGGCGGTACCATATCTGATTACAAGAACAGTGGCGGCGACGATGAAGATGATCTTAATGAGGAGGAAGATTCTGATGAAGAAGAAAAGCCACGTCAAAATGTTTCAGATGAATATAGACGTTTAATTGCTATTCATGCTGGGAAACCTAAAGGTGGACTAGTGGAAGGTCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGTCACAGCTTGAAAAGGCAGCTGAAACATATGGAAAAGAAATTGTCAGGTTTACTCAGAGGAATATACTGAGAGTGTATCCGAAAGGTACTCGCATTACCTCTTCAAATTATAATCCATTAATTGGGTGGATGCACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGAAGATCTCTTTGGTTGATGCAAGGAATGTTCAAAGCCAATGGAGGCTGTGGTTTTGTTAAAAAACCAGATTTTCTATTAAAAACTGGTCCCAATAATGAGGTTTTTGATCCTAAAGCTTCTTTGCCATTGAAAACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATTCTCACCTCCAGACTTCTATACAAGGGTGGGGATTGCTGGAGTCCCTTTTGACACTATTATGAAAAAAACTAAAACAAAAGAGGATAGTTGGTTGCCTTCTTGGAATGAGGTATTCGAGTTCCCGCTTTCAGTTCCGGAGTTGGCGCTGCTTCGTATAGAAGTTCATGAGTATGACATGTCTGAGAAGGATGACTTTGGTGGGCAAACATGTTTACCTGTGTGGGAACTAAGAAGTGGAATTCGAGCGGTTCCATTACATTCCCGCAAAGGAGTTAAATACAACAATGTAAAGCTTCTCATGCGCTTTGAGTTCATCTGA 1788 0.4217 MTSKPKKQTYSVCFCCRRRFKLGVSEAPPQIKELYDNYSDENAIMTASHLQRFLVEVQGDKNFTENEAQSIIDGHKHLSIFHRRGLNLESFFKFLFSDNNPPLLPSRGVHQDMSLPLSHYYIHTGHNSYLTGNQLSSDCSDAPIILALQRGVRVIELDIWPNGSKDDIEVLHGRTLTTPVALIKCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAQMVTQTFGDILFCPSSESLKEFPSPDSLKKRIIISTKPPKEYLEAKEGQEKEESVKGKSLGDEEAWGKEVPSLRGGTISDYKNSGGDDEDDLNEEEDSDEEEKPRQNVSDEYRRLIAIHAGKPKGGLVEGLKVDPDKVRRLSLSESQLEKAAETYGKEIVRFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGFVKKPDFLLKTGPNNEVFDPKASLPLKTTLKVTVYMGEGWYYDFKHTHFDQFSPPDFYTRVGIAGVPFDTIMKKTKTKEDSWLPSWNEVFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLHSRKGVKYNNVKLLMRFEFI 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04305 595 PRINTS Phospholipase C signature 406 424 IPR001192 GO:0035556
Vivi3g04305 595 PRINTS Phospholipase C signature 116 134 IPR001192 GO:0035556
Vivi3g04305 595 PRINTS Phospholipase C signature 561 571 IPR001192 GO:0035556
Vivi3g04305 595 PRINTS Phospholipase C signature 142 162 IPR001192 GO:0035556
Vivi3g04305 595 PRINTS Phospholipase C signature 239 256 IPR001192 GO:0035556
Vivi3g04305 595 PRINTS Phospholipase C signature 385 406 IPR001192 GO:0035556
Vivi3g04305 595 Pfam C2 domain 468 568 IPR000008 -
Vivi3g04305 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 111 255 - -
Vivi3g04305 595 CDD PI-PLCc_plant 110 434 - -
Vivi3g04305 595 MobiDBLite consensus disorder prediction 261 287 - -
Vivi3g04305 595 Gene3D C2 domain 463 595 IPR035892 -
Vivi3g04305 595 MobiDBLite consensus disorder prediction 305 319 - -
Vivi3g04305 595 SMART plcy_3 330 447 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vivi3g04305 595 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 360 446 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vivi3g04305 595 Gene3D - 27 105 - -
Vivi3g04305 595 SMART plcx_3 111 255 IPR000909 -
Vivi3g04305 595 CDD C2_PLC_like 465 594 - -
Vivi3g04305 595 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 359 445 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vivi3g04305 595 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 15 594 IPR001192 GO:0035556
Vivi3g04305 595 MobiDBLite consensus disorder prediction 261 329 - -
Vivi3g04305 595 FunFam Phosphoinositide phospholipase C 462 595 - -
Vivi3g04305 595 SUPERFAMILY EF-hand 21 113 IPR011992 -
Vivi3g04305 595 Gene3D Phosphatidylinositol (PI) phosphodiesterase 107 460 IPR017946 GO:0006629|GO:0008081
Vivi3g04305 595 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 467 594 IPR035892 -
Vivi3g04305 595 Pfam Phosphatidylinositol-specific phospholipase C, X domain 113 255 IPR000909 -
Vivi3g04305 595 SUPERFAMILY PLC-like phosphodiesterases 111 448 IPR017946 GO:0006629|GO:0008081
Vivi3g04305 595 SMART C2_3c 467 575 IPR000008 -
Vivi3g04305 595 Pfam Phosphoinositide-specific phospholipase C, efhand-like 30 97 IPR015359 -
Vivi3g04305 595 ProSiteProfiles C2 domain profile. 448 577 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04305 Vivi-Chr3 77170836 77174377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04305 7 595 Acyl Lipid Metabolism Gene Families AT3G55940 68.412 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04305 K05857 - gmx:100784534 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04305 3 77170836 77174377 Vivi7g02137 7 83563978 83568416 ECH
Vivi3g04305 3 77170836 77174377 Vivi3g04305 3 77170836 77174377 ECH
Vivi3g04305 3 77170836 77174377 Vivi7g02137 7 83563978 83568416 PCT