LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g04295	ATGAGGATGACAGTGGAGCCAAGCTACTCTCCAAGTACAACTCCCAAAGAAGAACTTGAATGGCTCCCTCTACCAAACCACCCTCTCTTCACCACCACCACCGCCTCTCACGACGCCACCGGCAACGTTTCCCGAAACCTTCTAGCTTGGGACGGAGCCAACCGTCTCTATTTCTGGGACTCACATAATAACTGCCTTCATCGTTTGTCTCTTCGCCTCGGTGATCCTGATCCTACTTCCGTTCTCGCCGCTTCTCCCTCTAAGGTGTTGCAAACAGATGTTGTGCTTGACTTTGATGTGCACAAAATCTCCATCAATAGGAATGGAACAGCGATACTTCTTTTTGGCTCTGAAAGACTCTGTGTTATGTATCTCTATGGACGCACATCCAAGAAGGATGTAAATTTGATTTGCAGGACCATTGCTGTTGGCTCTCAGACAGATTCCCTAGGAAACAATGATATTCGTGTATTGGAAGCATCATGGCACCCTTACAGTGATACTCATTTGGGAATCCTTTCTTCTGACTCAGTTTTTAGGCTTTTTAATCTGGCTGTGGATCCTTTGCAACCAGAGCAAGAATATTATTTACAGCCTGCAGGGCATGGTAGATCCAGAAATGCCTCATCATTGTGTCCAGTCGGTTTTTCTTTTGGGGGAGACCATTTGTGGGACAGGTTTAGTGTTTTTGTTGCATTCAGTGATGGGTCTATATATGTAATTTGCCCTGTTGTTCCATTTGGAAGTCTATTCAAATGTGAATCTTTATTAGACATATACAATGACGCTCATACATTTGGGCTAATGTCAGCCAACTCTGTAGCGGCTAGTAATTCAAAGTTGGCAATCTCCTGGCTAGAAGCAACATTTCCTGAGTTACAGAACCAAGAAACTGAAGGAGACAACTTGTCTTTGCTAAGATCTCATGCTTATGTAGTATTTGATGCATCTCTAGTCTTGCAGGGACCTCTGCAAAGAGTAGGTCAGAGTGGAAACGGAGATTCAGTTGGTCGCAGTGCTGAATGTGAGGGTCGTGCAGTTAGTTTTCTCTACAATTCAGTTAGCAAAGACTCTATCTTGGTTACTGCCTGGAGTGGGGGGCAATTACAGATAGATGCTCTAGCTGATGAGATCCAACCTGTCTGGAGTATTGGTAGTCCACCTCGTCTTCGTCTTGGCTCCCATGACGAAATACTTGGCCTTGCTATGATTTGTGAGTCAACTGCCAGCAGTCCCCCGGAGAAGCTTGATCATAATAATGCCTGGTTGGGTAATCCATCCCCTCTGCTGAGACTGGTTATTGTTGATTTGGCTCTGCCACGAAGAGCAGAAAGGGGTTATAATATTTCATTGTTCATTGATACCCTTATGCCAGAGAGAATATATTCCCTTCATGATGGAGGGATTGACTCAATAGTGTTGCATTGTCTTCCATTCACAAGTCAGGCAAATGGAAAGGATGATACAATGAGGACACCTTCTGTACATCCTGTTCTTAATACATGCCAGAGTGGATCTGCTTCAGAGCCTTCACTTTGTGGTTTTGTGTCATTGTCCGATTCATTTGGATATTCCTGGAGTGTGGCTGTTACTCTTTCTCGAGAATGTGTTGTGCTTGAGATGAAAACTTGGAACCTTTTGCCTCAATTAAGCATCGATATGGAGAAGAAGCACATTCAATCAGTGGGGCAATCAAATGAGAGAGATATTCAACCAATAATTAGCAAAGAACTGCTTAGTGGGCCCAAGGAGGTACTTGTTCCTTGGGCCTCTCAAAGTTTACGCTCAGTTGCAGCTGATTCAATTGAAGGCCGGTCAACATTGCATCAGTATTTCAAGCTATTTCATGAAACTTATGTGGAATATGCTCACAAGGTGCACCTGGAACTCAAGCATCATGCACCTCAGTTGAAGAAAATCATTAATGACCAACGTTCTCGATTAGGTGATGCACAGCAGAAACTTTTGAAAGTTGAAGATAAAGAGAATAAATTACAGAAAAGAATTGATCGTGCAATTCAAATGCACAATTCTTTGGAAGAGCGCTTACAACATTTAAGGAACCTACCTGGTGCTCACAAAAAACCACTGTCTAGAGCAGAGCGACAGTTTAAGTCTGAACTTGATCACTTCAAGGAAGTTGAGTTGGATGCATTGCATTCTTCTGTTGAAGCGGTAAGTGCCAGATTGAGAAGGCACATGCAAGCTTCGAAAGCTAGTCCACAGAAGAAAATATCAGGGAAGAAAGCTGGAGATGATCAGATATCAATACTCAAATCATCACTTGAAAAACTTTCACTTGTAAATACTGAAAATTCAAAGAAAGTTAAGATTGTTGAATCCACGTTGAGTAACAAAGAAAGAAACAGCGGAGAATCAAGTCTGCCTATGCTTAAAAACTGTTAG	2406	0.4273	MRMTVEPSYSPSTTPKEELEWLPLPNHPLFTTTTASHDATGNVSRNLLAWDGANRLYFWDSHNNCLHRLSLRLGDPDPTSVLAASPSKVLQTDVVLDFDVHKISINRNGTAILLFGSERLCVMYLYGRTSKKDVNLICRTIAVGSQTDSLGNNDIRVLEASWHPYSDTHLGILSSDSVFRLFNLAVDPLQPEQEYYLQPAGHGRSRNASSLCPVGFSFGGDHLWDRFSVFVAFSDGSIYVICPVVPFGSLFKCESLLDIYNDAHTFGLMSANSVAASNSKLAISWLEATFPELQNQETEGDNLSLLRSHAYVVFDASLVLQGPLQRVGQSGNGDSVGRSAECEGRAVSFLYNSVSKDSILVTAWSGGQLQIDALADEIQPVWSIGSPPRLRLGSHDEILGLAMICESTASSPPEKLDHNNAWLGNPSPLLRLVIVDLALPRRAERGYNISLFIDTLMPERIYSLHDGGIDSIVLHCLPFTSQANGKDDTMRTPSVHPVLNTCQSGSASEPSLCGFVSLSDSFGYSWSVAVTLSRECVVLEMKTWNLLPQLSIDMEKKHIQSVGQSNERDIQPIISKELLSGPKEVLVPWASQSLRSVAADSIEGRSTLHQYFKLFHETYVEYAHKVHLELKHHAPQLKKIINDQRSRLGDAQQKLLKVEDKENKLQKRIDRAIQMHNSLEERLQHLRNLPGAHKKPLSRAERQFKSELDHFKEVELDALHSSVEAVSARLRRHMQASKASPQKKISGKKAGDDQISILKSSLEKLSLVNTENSKKVKIVESTLSNKERNSGESSLPMLKNC	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g04295	801	Pfam	Nuclear pore component	23	195	IPR019321	-
	Vivi3g04295	801	Pfam	Nuclear pore component	448	780	IPR019321	-
	Vivi3g04295	801	Coils	Coil	641	689	-	-
	Vivi3g04295	801	SUPERFAMILY	WD40 repeat-like	46	241	IPR036322	GO:0005515
	Vivi3g04295	801	PANTHER	NUCLEOPORIN NUP84-RELATED	13	788	IPR037700	GO:0000055\|GO:0000056\|GO:0006913\|GO:0017056

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g04295	K14318		-	gmx:100801853	1301.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g04295	3	76970552	76976780	Vivi3g04295	3	76970552	76976780	ECH