Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04214 ATGAATGGCGAGGAGTGTGAAGAAATGGAAAGAGTGAATGAGAAATTGGTTTACATGTGGGGCTATTTACCGGGAGCTTTGCCGCAAAGGACGCCGTTGTTGACACCGGTTCTCGTTAGGGCTCCGGCGGGTGGTTGTAACTGGAAAGATGTTGCTGGTGGTGGATGTGGTTTCGCCATGGCTATATCTGAACAAGGAAAGCTTATAACATGGGGATCGACGGATGATCTTGGTCAAAGTTATGTAACTTCTGGAAAGCATGGGGAAATTCCAGAGCCTTTCCCTCTTCCGAATGAAGTTTCTATTGTAAAAGCTGCTTCTGCGTGGGCACATTGTGTTGCTGTAACAGATTGTGGAGAAGTTTACACATGGGGATGGAAGGAATGTATTCCTTCTGGGAAGGTATTAGGGGAAACTTTGCCAGGGGTAAGTTCTGAAAAAGTTGCACAAGGAAAGCAGAGTTCATTCTTGACAGACCAAGTGGGATCTCGTTCAGAAGGCTTGAAGTCCGTTGGAGGAACTGCTTCCAGTGGAGAAGAAAGTACTAAGAGAAGGAAGGTATCTTCAGCAAAGCAAACAGCTGAAATCTCATCATCTGGTGATGATATTCTAACAGCAATGCCATGTCTTGTCACACTAAATCCTGGGATAAGGATAACAAGCGTTGCTGCCGGTGGGCGTCATACCCTAGTATTGTCAGATATAGGACAGGTGTGGGGCTGGGGCTACGGAGGTGAAGGGCAGCTTGGTTTAGGTTCCAGAATACGTATGGTGTCCTCTCCACATCTTATTCCATGTATTGATTCCTCTTCGTATGGCAACGATATATCAACATCAGTGGCTCAAGGAAGCACGAGTTCAGAGGGACAGAATTTTAGGATTCCTGGAAGTTATATAAAGGGTATTGCCTGTGGAGGTCGACATAGTGCAGTAATCACAGACGCTGGAGCTGTGCTTGCGTTTGGTTGGGGACTATATGGACAGTGTGGGCAAGGAAGTACCGATGATGAACTAAGTCCGACCTGCGTGACTTCCTTGTTGGGTATTCGAATAGAAGTAGTGGCTGCTGGCCTGTGGCATACTGTCTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGCAACCAGTTTGGGCAGCTGGGAACTGGTTCTGATCAAGCCGAGACTCTACCAAGACTACTGGATTGTCCGAGCTTGGAAAATGTCAACGTAAAGACCGTATCTTGCGGGGCTCGTCATACTGCTCTAGTAACAGATAATGGAAAAGTCTTCAGTTGGGGATGGAACAAGTATGGACAGCTGGGCCTTGGGGACGTGATTGACCGCAACATTCCTTCTGAAGTAACCATAGAAGGCTGCGTAGCCAAAAACGTTGCATGTGGTTGGTGGCACACTCTTCTTTTGGCCGAGTCTCCCACTTGA 1425 0.473 MNGEECEEMERVNEKLVYMWGYLPGALPQRTPLLTPVLVRAPAGGCNWKDVAGGGCGFAMAISEQGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPNEVSIVKAASAWAHCVAVTDCGEVYTWGWKECIPSGKVLGETLPGVSSEKVAQGKQSSFLTDQVGSRSEGLKSVGGTASSGEESTKRRKVSSAKQTAEISSSGDDILTAMPCLVTLNPGIRITSVAAGGRHTLVLSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLIPCIDSSSYGNDISTSVAQGSTSSEGQNFRIPGSYIKGIACGGRHSAVITDAGAVLAFGWGLYGQCGQGSTDDELSPTCVTSLLGIRIEVVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGSDQAETLPRLLDCPSLENVNVKTVSCGARHTALVTDNGKVFSWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04214 474 MobiDBLite consensus disorder prediction 161 194 - -
Vivi3g04214 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 367 IPR000408 -
Vivi3g04214 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 472 IPR000408 -
Vivi3g04214 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 408 418 IPR000408 -
Vivi3g04214 474 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 65 470 - -
Vivi3g04214 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 222 232 IPR000408 -
Vivi3g04214 474 Gene3D - 271 400 IPR009091 -
Vivi3g04214 474 Gene3D - 401 474 IPR009091 -
Vivi3g04214 474 Gene3D - 12 270 IPR009091 -
Vivi3g04214 474 Pfam Regulator of chromosome condensation (RCC1) repeat 219 248 - -
Vivi3g04214 474 SUPERFAMILY RCC1/BLIP-II 17 472 IPR009091 -
Vivi3g04214 474 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 302 312 IPR000408 -
Vivi3g04214 474 MobiDBLite consensus disorder prediction 161 178 - -
Vivi3g04214 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 315 IPR000408 -
Vivi3g04214 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Vivi3g04214 474 Pfam Regulator of chromosome condensation (RCC1) repeat 316 363 IPR000408 -
Vivi3g04214 474 Pfam Regulator of chromosome condensation (RCC1) repeat 367 417 IPR000408 -
Vivi3g04214 474 Pfam Regulator of chromosome condensation (RCC1) repeat 421 469 IPR000408 -
Vivi3g04214 474 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 421 IPR000408 -
Vivi3g04214 474 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Vivi3g04214 474 PRINTS Chromosome condensation regulator RCC1 signature 357 375 IPR000408 -
Vivi3g04214 474 PRINTS Chromosome condensation regulator RCC1 signature 417 438 IPR000408 -
Vivi3g04214 474 PRINTS Chromosome condensation regulator RCC1 signature 222 238 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04214 Vivi-Chr3 74126791 74131762 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04214 - - gmx:100778841 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04214 3 74126791 74131762 Vivi3g04214 3 74126791 74131762 ECH