Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04169 ATGGACCGGGAAGAACCGATATTCGTGCCGATCCTCTCCTCCGAAGCCGGTGTTGTTGTTAGAGATGGGAATGGAACAGGAATACAGCTGATAATTGTAAACAACTGCAAAGAGAGTGTATGGCCAGGAATTCTCAGCAATGGAGGAAAACCTACAATTCAAGGAGGTGGATTCCATCTTCCAAGCGGCGAACAATTTGTTATCCAACTCCCTAACCATTGGGCCGGTCGAATCTGGGGTAGACAAGGCTGCTGTTTCGACGAAACAACTGGAAAAGGCACGTGTCAAACCGGAGACTGCGGCGGCCAGTTGAAATGCAAAGGAACTGGTGGTGTCCCTCCAGCTACACTTGTTGAAATGACACTTGGAACCTCAGACTCACCTTTGCATTACTATGATGTTAGTTTAGTTGACGGTTTTAACCTTCCTATGTCAATGAAGCCTGCTGGTGTTGGTGGTGGTGGAGGTGGTTGTGGTGATGCTGCTTGTGCAGCTGATTTGAACGGTTGTTGTCCTTCTTCACTTGTTGTGAAACATGATGGGAAAGTTGTGGGGTGTAAAAGTGCTTGTTTGGCTACGAAATCAGATAAGTATTGTTGCACTGGTGAATTTGCTGATCCGAAAAGTTGCAAACCTACTATGTTTGCTCGTGTTTTTAAGAGTGTTTGTCCTAGAGCTTATACCTATGCTTATGATGATTTAACTGGGCTTATGTCTTGTTTGGCAAATCGGTATGCCATTACATTTTGCCCTCCTCCATGA 762 0.4541 MDREEPIFVPILSSEAGVVVRDGNGTGIQLIIVNNCKESVWPGILSNGGKPTIQGGGFHLPSGEQFVIQLPNHWAGRIWGRQGCCFDETTGKGTCQTGDCGGQLKCKGTGGVPPATLVEMTLGTSDSPLHYYDVSLVDGFNLPMSMKPAGVGGGGGGCGDAACAADLNGCCPSSLVVKHDGKVVGCKSACLATKSDKYCCTGEFADPKSCKPTMFARVFKSVCPRAYTYAYDDLTGLMSCLANRYAITFCPPP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04169 253 PRINTS Pathogenesis-related protein signature 241 250 IPR001938 -
Vivi3g04169 253 PRINTS Pathogenesis-related protein signature 130 146 IPR001938 -
Vivi3g04169 253 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Vivi3g04169 253 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Vivi3g04169 253 PANTHER OS03G0233200 PROTEIN 30 251 IPR001938 -
Vivi3g04169 253 ProSitePatterns Thaumatin family signature. 91 106 IPR017949 -
Vivi3g04169 253 SMART tha2 30 251 IPR001938 -
Vivi3g04169 253 SUPERFAMILY Osmotin, thaumatin-like protein 29 252 IPR037176 -
Vivi3g04169 253 CDD TLP-PA 29 250 - -
Vivi3g04169 253 Gene3D Thaumatin 29 251 IPR037176 -
Vivi3g04169 253 FunFam Thaumatin-like protein 1a 28 251 - -
Vivi3g04169 253 Pfam Thaumatin family 34 251 IPR001938 -
Vivi3g04169 253 PIRSF PR5 9 253 IPR001938 -
Vivi3g04169 253 ProSiteProfiles Thaumatin family profile. 30 251 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04169 Vivi-Chr3 73282990 73292778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04169 29 251 Receptor kinase-like Gene Family AT5G38280 39.912 5.80e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04169 - - gmx:100809093 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04169 3 73282990 73292778 Vivi3g04169 3 73282990 73292778 ECH