Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04144 ATGGAGTCACCACAAACAAGAAAATCGGGACTAAATCTCCCAGCTGGAATGTCCAGCATAACCTCTTTACGCCTCGAAACCCTTTCAACTCCACCTTCTTCCGCTTCACCTCGTGCAATCTCGAATCTCTCATCATCATCCTCACCTTCAAAAACTTCTTCTTGTAGTGATAGATTCATACCTTGTAGATCCTCTTCGAGGCTCCACACGTTCGGGTTGATCGATAAACCGTCACCGGTTAAAGAAGGGAGTAACGAAGCTTATTCGAGGTTATTGAAATGTGAGCTGTTTGGATCTGACTTTGCTTCTCCTTCTTCTCCTGCAGGTTGTGCTGGTGGTCCTGCTTCGCCTATGATGAGTCCTAGCAAGAATATGCTTCGGTTTAAGACGGATCAGTTGGGACCTTCTTCGCCTTTTTCGTCGAATTCGCCTTCGATTTTTGGACATCATTCTGGTTTCTCTAATGAATCTGCTACTCCTCCTAAGCCTCCTAGGAAAGTGCCCAAGACACCCCACAAGGTTTTGGATGCGCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCCTCACAAAATACTCTAGCAGTGGGGCTTGGCACTTGTGTTTATCTATGGAGTGCTTCAAACAGCAAAGTGACTAAGCTTTGTGACTTGGGGCCTTATGATGGTGTATGTTCTGTCCAGTGGACCAAGGAGGGTTCTTTCATATCTATTGGTACAAACCTTGGTCAAGTTCAGATTTGGGATGGTACTAAATGCAAGAAGGTCAGAACAATGGCAGGGCATCAAACAAGAACCGGTGTCTTGGCATGGAATTCTCGGATTTTGGCTTCAGGTAGTAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTATTGGCAAGCTTGTTGGGCACAAGTCCGAGGTTTGTGGATTGAAATGGTCATGTGATGATAGGGAACTTGCTTCTGGTGGTAACGATAATCAGCTGTTGGTATGGAATCAACACTCTCAGACACCAACTTTGAGACTTACAGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCGCCTCACCAGAGCAACCTCCTTGTGTCTGGAGGTGGAACTGCGGATAGGTGTATTCGCTTCTGGAATACTACAAATGGTCACCAATTGAACTCTGTTGACACTGGAAGCCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAACGAGCTAGTAAGTACTCATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCTCTATCAAAGGTTGCAACTCTAACTGGTCACAGCATGAGAGTACTATACCTTGCAATGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAGACTCTGCGGTTTTGGAATATTTTCCCATCAATGAAAACACCTGCCCCAGTTAAAGATACAGGCCTTTGGTCACTCGGCCGCACCCAAATTCGATGA 1473 0.4542 MESPQTRKSGLNLPAGMSSITSLRLETLSTPPSSASPRAISNLSSSSSPSKTSSCSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNEAYSRLLKCELFGSDFASPSSPAGCAGGPASPMMSPSKNMLRFKTDQLGPSSPFSSNSPSIFGHHSGFSNESATPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNLGQVQIWDGTKCKKVRTMAGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQTPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTPAPVKDTGLWSLGRTQIR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04144 490 FunFam FIZZY-related 2 isoform 1 168 468 - -
Vivi3g04144 490 Gene3D - 125 467 IPR015943 GO:0005515
Vivi3g04144 490 SUPERFAMILY WD40 repeat-like 166 466 IPR036322 GO:0005515
Vivi3g04144 490 MobiDBLite consensus disorder prediction 150 171 - -
Vivi3g04144 490 Pfam Eukaryotic translation initiation factor eIF2A 331 459 IPR013979 -
Vivi3g04144 490 CDD WD40 206 465 - -
Vivi3g04144 490 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 389 IPR001680 GO:0005515
Vivi3g04144 490 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 344 IPR001680 GO:0005515
Vivi3g04144 490 ProSitePatterns Trp-Asp (WD) repeats signature. 452 466 IPR019775 -
Vivi3g04144 490 SMART WD40_4 255 292 IPR001680 GO:0005515
Vivi3g04144 490 SMART WD40_4 426 465 IPR001680 GO:0005515
Vivi3g04144 490 SMART WD40_4 338 380 IPR001680 GO:0005515
Vivi3g04144 490 SMART WD40_4 212 252 IPR001680 GO:0005515
Vivi3g04144 490 SMART WD40_4 296 335 IPR001680 GO:0005515
Vivi3g04144 490 SMART WD40_4 168 209 IPR001680 GO:0005515
Vivi3g04144 490 SMART WD40_4 383 423 IPR001680 GO:0005515
Vivi3g04144 490 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Vivi3g04144 490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 433 466 - -
Vivi3g04144 490 ProSiteProfiles Trp-Asp (WD) repeats profile. 433 466 IPR001680 GO:0005515
Vivi3g04144 490 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 44 472 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vivi3g04144 490 MobiDBLite consensus disorder prediction 26 58 - -
Vivi3g04144 490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04144 Vivi-Chr3 72759764 72762692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04144 300 466 Miscellaneous Gene Families AT5G08390 20.833 6.75e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04144 K03364 - gmx:547741 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04144 3 72759764 72762692 Vivi3g04144 3 72759764 72762692 ECH