Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04106 ATGTCTCTGCGCATATCAATGTCAAAATTGCTCAAAAAACTTCGCTTTCCTGCTTCCCACACCTTCTCCGCCTCTACAGTTGCCAAAAATCCAGTGCCCATCTCATTTTCGGGTAAAGGACTTTCACACTGGTATCAAACTGGTGCATATGATTGGGGAACAAATCTTAGGGATCCTTGTTTATGGATTGTTATATCTGGACATGTAGTTGCAACTCTTGGAATTAGTGCCAACGTTGCGTTTGCGGAGGATGTAACGTCCGAAACATCTTCTGATGATAGCACTGGGGGATTTAAAAGAATTGAGGATGGTTCTGTAGCATCGAATATACATACAGCAAAATGGAGAGTTTTTACCGATAAAGGAAGAGAGTTTTTCCTAGAGGGAAAATTCGATGATGCTGAAAGACTCTTCATTGCTGCTATACAAGAAGCTAAAGAAGGTTTTGGCGAGCAAGATCCGCATGTTGCGTCTGCGTGCAACAATCTGGCAGAGATGTACAGGGTCAAGAAGGCATTTGACAAAGCGGAGCCGTTGTATTTGGAAGCTATCAAGATCCTAGAAGAATCGTTTGGTCCTGATGATGTAAGGGTTGCGGTTGCTGTTCACAACCTAGGGCAGTTCTACCTTGGACAACGAATGTTGGATAAAGCTCAAGTTAGCTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGATATGGCCATTCAGAATGTTCAGATACGATGTATCAGATCGGCATGGTGCTGTATCTTCAAGGAAAAGAAAAGGAGGCTGAGACCATTATTAAGGACTCTATAAGCATGCTAGAGAAAAGTGCTGAAGGGGAGTCATTTGTATGTATTAAAAGACTTCGTTTCCTCTCACAGTTATATTTGAAATCACATCGTCTTGATGAAGCTGAGATGGTCCAGAGAAAGATCCTCAACATAATGGAATTATCAAAGGGGTGGAATTCTATGGACACAGTTATTGCAGCTGAATCCTTGGCCTTGACACTACTAGCATCTTCCGAAACAAAACAGTCCAAAGAGCTTCTTGAAAGATGTCTTGATGTCCGGAAAACCTTACTTCAAAGTAATCATATTCAGATTGGTGCAAACCTACTTCATCTAGCTAGAGTGGCAATGCTTGATTACAACCAAAACAAAAAATTGGATGTTTCTAAAGCTAAAGCTGAGCTTGATATAGCAAAGGATCATTTGCATAATTCCATAAGGACTGCGCGTCAATGTTTAGATAAAGTATTGAAACAAAAAGACAGGTCGAAGAAAAACAGTATGGTTGAACGTTCTAGAAAGGAAGCCCAAGCAACACTTGTCATATTGTTGCAATCACTCAGCACTCTATCATCTGTGGAGTTGGCTAAGCAAGAATTGCAGGAGATTCAGGAAGGAGAAATCAACCTTAAGGCTAAAGAGGCACTTCTACAATGCATTGCTGCTTACAACGAGTTTGTTGTGCACAAGAAGTCCATTGGTGATTCTCCTGAAATAAAGAATGAGTATCTTTCATGTTTTAAGCATGCTCAAACCTTGCTTGGCAGTAAACTTGAAGGAGAGGGTATCCATAAGCTGAATCAAACACCATGA 1596 0.4104 MSLRISMSKLLKKLRFPASHTFSASTVAKNPVPISFSGKGLSHWYQTGAYDWGTNLRDPCLWIVISGHVVATLGISANVAFAEDVTSETSSDDSTGGFKRIEDGSVASNIHTAKWRVFTDKGREFFLEGKFDDAERLFIAAIQEAKEGFGEQDPHVASACNNLAEMYRVKKAFDKAEPLYLEAIKILEESFGPDDVRVAVAVHNLGQFYLGQRMLDKAQVSYERALKIKRRVLGYGHSECSDTMYQIGMVLYLQGKEKEAETIIKDSISMLEKSAEGESFVCIKRLRFLSQLYLKSHRLDEAEMVQRKILNIMELSKGWNSMDTVIAAESLALTLLASSETKQSKELLERCLDVRKTLLQSNHIQIGANLLHLARVAMLDYNQNKKLDVSKAKAELDIAKDHLHNSIRTARQCLDKVLKQKDRSKKNSMVERSRKEAQATLVILLQSLSTLSSVELAKQELQEIQEGEINLKAKEALLQCIAAYNEFVVHKKSIGDSPEIKNEYLSCFKHAQTLLGSKLEGEGIHKLNQTP 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04106 531 Gene3D Tetratricopeptide repeat domain 282 408 IPR011990 GO:0005515
Vivi3g04106 531 Coils Coil 454 474 - -
Vivi3g04106 531 SUPERFAMILY TPR-like 238 358 IPR011990 GO:0005515
Vivi3g04106 531 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Vivi3g04106 531 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 4 518 - -
Vivi3g04106 531 Gene3D Tetratricopeptide repeat domain 120 281 IPR011990 GO:0005515
Vivi3g04106 531 SUPERFAMILY TPR-like 113 260 IPR011990 GO:0005515
Vivi3g04106 531 Pfam Tetratricopeptide repeat 158 230 - -
Vivi3g04106 531 SMART tpr_5 157 190 IPR019734 GO:0005515
Vivi3g04106 531 SMART tpr_5 325 358 IPR019734 GO:0005515
Vivi3g04106 531 SMART tpr_5 115 148 IPR019734 GO:0005515
Vivi3g04106 531 SMART tpr_5 241 274 IPR019734 GO:0005515
Vivi3g04106 531 SMART tpr_5 199 232 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04106 Vivi-Chr3 71908725 71919844 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04106 - - psat:127083788 931.784