Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04076 ATGGACGATGAAGTGCGGAAGATCTTCAACAAATTCGACAAGAACGGCGACGGGAAGATCTCGCGCGCGGAGCTCAAGGAGATGATGCTGGCGCTCGGATCTAAGACGACGTCGGAGGAAGTTAATCGGATGATGGCGGAGGTTGACCAGAACGGCGACGGTTACATTGATCTGAAGGAGTTCGGAGAAATACACACCGGCGGCGGGGATTCTTCGGAGCTCCGGGAGGCGTTTGAGATGTATGATTTGGATAAGAATGGATTGATCTCGGCGAAGGAGCTGCACGCGGTGATGCGGCGGTTGGGGGAGAAGTGTTCGCTCAGTGATTGCCGGAAGATGATCGGAAACGTCGACGCCGATCGCGATGGTAATGTGAATTTTGAAGAGTTTAAGAAGATGATGGGTGGCTCTTAA 414 0.529 MDDEVRKIFNKFDKNGDGKISRAELKEMMLALGSKTTSEEVNRMMAEVDQNGDGYIDLKEFGEIHTGGGDSSELREAFEMYDLDKNGLISAKELHAVMRRLGEKCSLSDCRKMIGNVDADRDGNVNFEEFKKMMGGS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04076 137 Gene3D - 70 135 - -
Vivi3g04076 137 SUPERFAMILY EF-hand 3 134 IPR011992 -
Vivi3g04076 137 CDD EFh 4 66 IPR002048 GO:0005509
Vivi3g04076 137 FunFam Calmodulin 1 1 67 - -
Vivi3g04076 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Vivi3g04076 137 SMART efh_1 109 137 IPR002048 GO:0005509
Vivi3g04076 137 SMART efh_1 4 32 IPR002048 GO:0005509
Vivi3g04076 137 SMART efh_1 73 101 IPR002048 GO:0005509
Vivi3g04076 137 SMART efh_1 40 68 IPR002048 GO:0005509
Vivi3g04076 137 FunFam Probable calcium-binding protein CML27 68 137 - -
Vivi3g04076 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Vivi3g04076 137 Gene3D - 1 68 - -
Vivi3g04076 137 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Vivi3g04076 137 CDD EFh 73 134 IPR002048 GO:0005509
Vivi3g04076 137 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Vivi3g04076 137 Pfam EF-hand domain pair 4 61 IPR002048 GO:0005509
Vivi3g04076 137 Pfam EF-hand domain pair 73 134 IPR002048 GO:0005509
Vivi3g04076 137 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Vivi3g04076 137 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Vivi3g04076 137 ProSiteProfiles EF-hand calcium-binding domain profile. 105 137 IPR002048 GO:0005509
Vivi3g04076 137 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 73 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04076 Vivi-Chr3 71068858 71069797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04076 3 134 EF-hand Containing Proteins AT1G18210 56.061 2.28e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04076 K13448 - gmx:100806813 244.973