Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04074 ATGAACGTTAACCGAAAGAGAAGCTACCATTCAATTTCATCTCCTTCACCATCAGTTCCAATCCTTCAAAACACCACAACTCTCTCTCCACTACCATTACCACCACTCGGCAATACCAAATCCCTCTTTGAAATCATCTCCACAAACCCTTCCCTTACCGTCGAAAAATCTCTCGAAGATTCCCGCCTCGATGTCACACCACAAGACGTCGAACAAGTCCTCAAGCTCTCCTACCGCTTCCCCGCCCAGGCCGTCAAATTCTTCCGCTGGTCCGGCCACCGCATCAACCACAACCACACTCCCTACGCGTGGAACCTCGTGATCGATATTTTAGGTAAAAACCGTTTGTTCGATGCAATGTGGGACGCGGTTAAATCTATGCGGAGAGAAGGTTTGCTTTCGCGGTCGACGTTTGCGTCGATTTTCGCTAGCTATGTTAATGCGGGGAGAATTGCTGATGCTGTGACGACTTTTGAGGTTATGGATGGGTATGGCTGTGTGAGGGATGTTGTTTCGTTGAATTCGTTGTTGAGTGCTGTTTGTAGTAGCGGTAGGGTTGTTGAGGCTTGTGATTATTTGCAGATTGGGAAGAAGCTTGTGAGGCCGGATTCGGATACGTATGCGATTTTGATGGAGGGTTTGGAGAGTGATGGGAATGTTGTTGGTGCTAAAGAGACTTTTGCTGAGATGGTTATTGAGATTGGTTGGGATCCGGTTAATGTTCCGGCTTATGATTCGTTTCTTTGTACTGTGATTAAGGGGCCGGATGGGATTCGTGATGCTGTTAAGTTTTTTGATTCGATGAGAGATAGGAGGTGTTATCCGGGGGTTAGGTTTTTTAGAGTTGCGCTTGATGAGTGTGTTAGGTTTCATGATGTAAGGAGGGCGGAGTTTTTTTGGGATGTTATGTTGGGGAAAACCGCGTTGCAGCCTACGACTGCTATGTATAATTCGATGATTGCTTTGTATTGTTATCATGATGATATTGATGCTGCTATGAAGATGCTTGATGGAATGGTTTATAAGGGGGCTTTTCCTGATGCCCTTACTTATAATTTGTTGTTTAGGTTTTTGATTAAAGGGAGGAAAACAAGGGAGGCGTCGAGGATGTTTGTTGAGATGCTGAAGAATGAGTGTCTTCCTGATCAGCTTAACTGTGATGCGGCGGTCAGGCTTTATTTGGATAAGGGGGATCCTGTTATGGCTATAAAAATTTGGAAGTGTTTGGTTGAGAATTACCGTGAGGATTTAGAGGGTACTGCTAATCTGCTGGTTGTAGGGCTTCGAGATAATGATAGGGTCCCTGAAGCAGTTAAGTATGCCGAGCATATTATTGCTATTGGAATCAAGTTAACTTCTTCTACATTGTCAAAGCTGAGACAAAGCCTTGTCAAAGAAAGAAAAGAATTTGTGTATGATGAACTTATAGCAAAGTGGAAAGCGGCCTATTAG 1452 0.4435 MNVNRKRSYHSISSPSPSVPILQNTTTLSPLPLPPLGNTKSLFEIISTNPSLTVEKSLEDSRLDVTPQDVEQVLKLSYRFPAQAVKFFRWSGHRINHNHTPYAWNLVIDILGKNRLFDAMWDAVKSMRREGLLSRSTFASIFASYVNAGRIADAVTTFEVMDGYGCVRDVVSLNSLLSAVCSSGRVVEACDYLQIGKKLVRPDSDTYAILMEGLESDGNVVGAKETFAEMVIEIGWDPVNVPAYDSFLCTVIKGPDGIRDAVKFFDSMRDRRCYPGVRFFRVALDECVRFHDVRRAEFFWDVMLGKTALQPTTAMYNSMIALYCYHDDIDAAMKMLDGMVYKGAFPDALTYNLLFRFLIKGRKTREASRMFVEMLKNECLPDQLNCDAAVRLYLDKGDPVMAIKIWKCLVENYREDLEGTANLLVVGLRDNDRVPEAVKYAEHIIAIGIKLTSSTLSKLRQSLVKERKEFVYDELIAKWKAAY 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04074 483 Pfam PPR repeat family 311 357 IPR002885 -
Vivi3g04074 483 Pfam PPR repeat 171 193 IPR002885 -
Vivi3g04074 483 Pfam PPR repeat 103 132 IPR002885 -
Vivi3g04074 483 Gene3D Tetratricopeptide repeat domain 78 237 IPR011990 GO:0005515
Vivi3g04074 483 Gene3D Tetratricopeptide repeat domain 238 424 IPR011990 GO:0005515
Vivi3g04074 483 NCBIfam pentatricopeptide repeat 315 347 IPR002885 -
Vivi3g04074 483 NCBIfam pentatricopeptide repeat 350 382 IPR002885 -
Vivi3g04074 483 NCBIfam pentatricopeptide repeat 137 170 IPR002885 -
Vivi3g04074 483 NCBIfam pentatricopeptide repeat 102 132 IPR002885 -
Vivi3g04074 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vivi3g04074 483 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 136 303 - -
Vivi3g04074 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vivi3g04074 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04074 Vivi-Chr3 71001743 71004417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g04074 138 480 Glycosyltransferase AT1G05670 23.256 1.23e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04074 - - tpra:123894758 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04074 3 71001743 71004417 Vivi3g04074 3 71001743 71004417 ECH