Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g04072 ATGGAAGATCCATCGGAGAGGTTGGGATCGGGTGATTTGGATTCCGTCTCCGCAGTTAAGACCGACGACTTCTCCATGGAAATTGATCCGCCTTTTCAGGAAAACGCTGTAACAGCCGAGGACTGGCGGAAGTCTCTCAGCAAAGTCGTTCCTGCAGTCGTCGTTCTTCGGATAACCGCTACTCGTGCTTTCGATACTGAGTCCGCTTCCGCCAGCTACGCTACTGGTTTTGTCGTTGATAAACGCCGTGGTATTATTCTCACCAATCGCCATGTCGTCAAGCCTGGACCTGTTGTTGCAGAAGCTATGTTTTTGAACCGGGAAGAGGTTCCGGTGCATCCTATATACAGAGATCCAGTTCATGATTTTGGGTTCTTTCGGTATGATCCTAGTGCTATACAATTTCTAAACTATGAAGAGATACCTCTTGCTCCCGAGGGTGCTTGTGTTGGATTAGAAATCAGAGTTGTTGGTAATGATAGTGGTGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGACAGGGATGCTCCTCACTATAAAAAGGATGGGTATAATGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGATCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCAGTTGGCCTGAATGCTGGGAGCAAGACAACAAGTGCATCAGCATTCTTTTTACCTCTAGAACGAGTTGTGAGAGCATTAAGGTATCTTCAAAAGGGGAGAGAAACATATGTTGATAAATGGATGGCAGTTTCTATACCTCGCGGTACACTTCAGGTGACTTTTCTCCATAAAGGGTTTGATGAGACTCGTCGACTTGGCCTTAGAAGTGAGACAGAGCAGACAGTACGGCATGCTTCTCCTGCCAGTGAAACTGGAATGCTTGTTGTGGAATCTGCAGTGCCAGGTGGTCCAGGCTATAAACATTTGGAACCGGGTGATGTACTTGTTCGTGTCAATGGCGAGGTCATAACTCAATTCCTGAAACTGGAGACTATACTTGATGACAGTGTAAACTCAAACATCGAATTACAAATTGAAAGAGGTGGTGTGTCAAAGAGTTTAACTCTAATGGTGCAAGATCTGCACTCAATAACTCCCAATTATTTCTTGCAAGTTAGTGGAGCAATAATCCATCCTCTTTCATATCAGCAGGCTAGGAACTTCCGATTTCAATGTGGTCTTGTTTATGTGACAGAACCGGGATATATGCTCTTTAAAGCAGGAGTTCCCCGCCATGCAATAATTAAAAAATTTGCTGGTGAAGAAATATCTTGCCTTGAGGAACTAATATCAGTTCTGTCTAAGCTATCAAGGGGTGCTCGAGTACCATTGGAGTATATAAGCTACGTGGATCGTCATCGAAGGAAGTCGGTGTTAGTGACGGTTGATCGCCACGAATGGTATGCTCCTCCCCAGATATACACTCGAGACGACAGTACTGGCCTGTGGATTGCTAAACCTGCTTTTCAGTCTGAATCCCCTTTTCTATCATCTGGGACTAAAGATGTTGGAAGTCTGGCCAGCAGTCCAATTTCATTAACTGGTGAGCATGCTTGTGGGGGAGATGTGTCTGAAGGTAACCATCATGAGTTGGTTGATGGTGTCACTAGCATGGAAACTAATTACGAAGAATCTTCAGAGGGTGTATCTCACCACAGTGGATCTGATGGGATAGTAAAAAAACGGAGAGTAGATGATTTATCAACTGATGGAAGTGTAGCTGATATTTCCTTAAATGAATCCGAGGAAACTAAGCTAGAAAAGTCAGGTGCCATACAGGATGATGGGTTAATGGACTATCAAGGCGCAACTGCTGCTACCGCAAATGCATCGATAACTGAACGTGTGATTGAGTCTACTCTGGTGATGTTTGAGGTGCATGTTCCTCCGTCTTGTATGCTTGATGGTGTTCATTCGCAGCATTTTTTTGGAACGGGTGTCATAATATATCAAACTCAAGATATGGGATTGGTTGCAGTTGACAAGAATACTGTTGCAGTATCTTCCTCTGATGTGTTGCTATCTTTTGCTGCTTTCCCCATTGAAATTCCTGGAGAGGTGGTGTTTCTCCATCCTGTTCACAATTATGCTCTCATATCATATGACCCATCTGCCTTGGGACCTGTTGGTGCTTCAGTGGTTCGTGCTGCAGAGTTACTTCCAGAGCCAGCATTATGCCGAGGAGATTCTGTTTACCTTGTGGGCTTAAGCAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTGCGCTGCATTAAATATAGGATCGGCAGACTCCCCACGTTACAGAGCAACAAATATGGAAGTTATTGAGCTTGATACTGATTTTGGTAGTTCATTTTCGGGTGTGCTAACAGACGAACATGGAAGGGTCCAGGCTTTATGGGGAAGCTTCTCTACTCAGCTGAAATTCAGTGGCAGTACATCAGAAGATCATCAATTCGTGAGGGGAATGCCGATTTATGCAATAAGCCAGGTCCTGGATAAGATCATATCTGCTGCAAATGGGCCACCTCTTCTCATAAATGGTGTCAAAAGGCCTATGCCACTTGTGAGAATATTAGAAGTTGAACTTTATCCAACATTACTTTCAAAGGCTCGCAGTTTTGGATTAAGCGATGTTTGGATTCAGGCGCTTGTTAAGAAAGATCCAATAAGACGGCAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAGAATCTTTTGGAGCAAGGAGACATGATTTTAGCAATCAATAAAAAACCAGTCACATGCTTCCTTGACATTGAAAATGCTTGCCAAGCCTTAGATAAATCTAATACCAATGATGGCTTGCTCCAGATGACTATTTTTCGGCAGGGACGAGAGGTTGAACTTCTTGTGGGAACAGATGTTAGGGATGGAAATGGCACAACCCGTACAGTTAATTGGTGTGGTTGTGTAGTTCAAGATCCACATTCAGCGGTACGCGCTCTTGGATTTCTTCCTGAAGAGGGTCACGGTGTATATGTGGCAAGGTGGTGTCACGGGAGTCCGGTACATAGATATGGTCTGTATGCTCTTCAGTGGATAGTTGAAATTAATGGAAAGCCAACTCCAGATCTAGATTCTTTTGTTAATGTGACTAAGGAATTAGAGCATGGAGAGTTTGTTCGTATTAGAACAATTCACCTCAATGGAAAGCCAAGAGTCCTAACATTGAAGCAAGATTTGCACTACTGGCCTACATGGGAATTGAGATTTAATCCAGACACTGCAGTTTGGCATCGAAATGTAATCAAGGCATTGAACTGCAATTCTGTATGA 3336 0.4388 MEDPSERLGSGDLDSVSAVKTDDFSMEIDPPFQENAVTAEDWRKSLSKVVPAVVVLRITATRAFDTESASASYATGFVVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPSAIQFLNYEEIPLAPEGACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVGLNAGSKTTSASAFFLPLERVVRALRYLQKGRETYVDKWMAVSIPRGTLQVTFLHKGFDETRRLGLRSETEQTVRHASPASETGMLVVESAVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETILDDSVNSNIELQIERGGVSKSLTLMVQDLHSITPNYFLQVSGAIIHPLSYQQARNFRFQCGLVYVTEPGYMLFKAGVPRHAIIKKFAGEEISCLEELISVLSKLSRGARVPLEYISYVDRHRRKSVLVTVDRHEWYAPPQIYTRDDSTGLWIAKPAFQSESPFLSSGTKDVGSLASSPISLTGEHACGGDVSEGNHHELVDGVTSMETNYEESSEGVSHHSGSDGIVKKRRVDDLSTDGSVADISLNESEETKLEKSGAIQDDGLMDYQGATAATANASITERVIESTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYQTQDMGLVAVDKNTVAVSSSDVLLSFAAFPIEIPGEVVFLHPVHNYALISYDPSALGPVGASVVRAAELLPEPALCRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSSFSGVLTDEHGRVQALWGSFSTQLKFSGSTSEDHQFVRGMPIYAISQVLDKIISAANGPPLLINGVKRPMPLVRILEVELYPTLLSKARSFGLSDVWIQALVKKDPIRRQVLRVKGCLAGSKAENLLEQGDMILAINKKPVTCFLDIENACQALDKSNTNDGLLQMTIFRQGREVELLVGTDVRDGNGTTRTVNWCGCVVQDPHSAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPDLDSFVNVTKELEHGEFVRIRTIHLNGKPRVLTLKQDLHYWPTWELRFNPDTAVWHRNVIKALNCNSV 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g04072 1111 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Vivi3g04072 1111 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Vivi3g04072 1111 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Vivi3g04072 1111 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Vivi3g04072 1111 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Vivi3g04072 1111 Pfam PDZ-like domain 373 446 IPR025926 -
Vivi3g04072 1111 Pfam PDZ-like domain 981 1057 IPR025926 -
Vivi3g04072 1111 Pfam Trypsin-like peptidase domain 74 220 - -
Vivi3g04072 1111 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
Vivi3g04072 1111 SUPERFAMILY PDZ domain-like 1009 1089 IPR036034 GO:0005515
Vivi3g04072 1111 Gene3D - 279 373 IPR036034 GO:0005515
Vivi3g04072 1111 Gene3D - 983 1082 IPR036034 GO:0005515
Vivi3g04072 1111 CDD PDZ_serine_protease 280 366 - -
Vivi3g04072 1111 SUPERFAMILY PDZ domain-like 905 1007 IPR036034 GO:0005515
Vivi3g04072 1111 SUPERFAMILY Trypsin-like serine proteases 40 246 IPR009003 -
Vivi3g04072 1111 Pfam PDZ domain 305 357 IPR041489 -
Vivi3g04072 1111 Gene3D - 903 977 IPR036034 GO:0005515
Vivi3g04072 1111 Gene3D - 146 260 IPR043504 -
Vivi3g04072 1111 SUPERFAMILY Trypsin-like serine proteases 633 819 IPR009003 -
Vivi3g04072 1111 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Vivi3g04072 1111 Gene3D - 29 140 IPR043504 -
Vivi3g04072 1111 SMART pdz_new 280 359 IPR001478 GO:0005515
Vivi3g04072 1111 SMART pdz_new 1000 1069 IPR001478 GO:0005515
Vivi3g04072 1111 SMART pdz_new 881 964 IPR001478 GO:0005515
Vivi3g04072 1111 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 18 1107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g04072 Vivi-Chr3 70903810 70924893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g04072 K22686 - gmx:100809144 1983.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g04072 3 70903810 70924893 Vivi3g04072 3 70903810 70924893 ECH