Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03990 ATGGGTGGATCACATTCGAAACGAAGGGGCTCTAGAAGCTCTAGGCAGCGTTCTTCATCATCTTCAAGGTCAAATCCTATGTTTCCTCAATATCAATCTCCTTATTTGCCACAACCACAGGATCATGGAACAATGGGGTATAATTATGGAGTTCAACCTCCACCTCAAAGCTATGGTGGTAGTGTTGCTCATGCTCCTCAACAAAGTAAGAGTTCGGATAAAAAGTTTACAAGGATTGGTGATAATTATAGTAGTTTGGAACAGGTAACTGAGGCTCTAGCAAGTGCTGGCCTAGAGTCTTCTAATCTCATTGTTGGTATTGATTTTACGAAAAGCAATGAGTGGACAGGCGCAAGGTCATTTCAAAGGAGATGCCTTCATCATATCGGGAATGAACAAAATCCGTATGAACAAGCTATATCTATCATTGGGAAAACACTGTCCTCCTTTGATGAGGATAACTTGATTCCTTGTTTTGGATTCGGAGATGCTTCAACACATGACCAAGAAGTTTTTAGTTTCAATGCCGAGGATAGATTTTGTCATGGGTTTGAAGAAGTTTTGTCACGTTATAGGGAATTGGTCCCTCAATTAAGGCTTGCAGGACCCACGTCATTTGCTCCGGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGAAGGCCAATACCATGTTTTATTGATTATAGCTGATGGGCAGGTAACAAGAAGTGTTGACACAGAGCGTGGGCAATTGAGTACACAAGAAAGAAAAACTGTAGAAGCAATTGTGAAAGCTAGTGAATATCCCCTGTCAATTATACTAGTCGGAGTTGGAGACGGGCCATGGGACATGATGAAAGAATTTGACGATAACATACCTGCTCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACCGAAATAATGTCAAAGAATATGGATCGGTCTAGAAAGGAAGCCGAGTTTGCACTTTCTGCGTTAATGGAAATACCTTCGCAGTACAAGGCAACACTAGAACTTAATATATTGAGCAATCGTAGAAGGAATGATATACATAGGATTCCTCTACCACCACCTCAATATGGCACATCATCTTTCAACACCCCAAAATCTTCCATTCAAAATAATTTTCGCCCCAGCGCACCATCTCACAGTCACAACAAACCCAGTGTTGGCGTGAACCCCCATGCAAGTTCTGCTTCTGATAATCAGTTTTGTCCCATTTGCCTTTCCAATCCAAAGGATATGGCCTTTGGTTGCGGACATCAGACATGCTGCGAGTGCGGTCAAGATCTTGAGCTATGCCCCATTTGCAGGAGTAGCATTAATACTAGAATAAAGCTTTATTAG 1335 0.4165 MGGSHSKRRGSRSSRQRSSSSSRSNPMFPQYQSPYLPQPQDHGTMGYNYGVQPPPQSYGGSVAHAPQQSKSSDKKFTRIGDNYSSLEQVTEALASAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGNEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNAEDRFCHGFEEVLSRYRELVPQLRLAGPTSFAPVIEMAITIVEQSEGQYHVLLIIADGQVTRSVDTERGQLSTQERKTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKEAEFALSALMEIPSQYKATLELNILSNRRRNDIHRIPLPPPQYGTSSFNTPKSSIQNNFRPSAPSHSHNKPSVGVNPHASSASDNQFCPICLSNPKDMAFGCGHQTCCECGQDLELCPICRSSINTRIKLY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03990 444 SUPERFAMILY RING/U-box 395 440 - -
Vivi3g03990 444 MobiDBLite consensus disorder prediction 355 391 - -
Vivi3g03990 444 PANTHER COPINE FAMILY PROTEIN 1 7 421 - -
Vivi3g03990 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 444 IPR013083 -
Vivi3g03990 444 ProSiteProfiles Zinc finger RING-type profile. 401 434 IPR001841 -
Vivi3g03990 444 MobiDBLite consensus disorder prediction 15 39 - -
Vivi3g03990 444 MobiDBLite consensus disorder prediction 348 391 - -
Vivi3g03990 444 SUPERFAMILY vWA-like 102 284 IPR036465 -
Vivi3g03990 444 MobiDBLite consensus disorder prediction 1 75 - -
Vivi3g03990 444 Pfam Zinc finger, C3HC4 type (RING finger) 398 438 - -
Vivi3g03990 444 Pfam Copine 125 339 IPR010734 -
Vivi3g03990 444 SMART VWA_4 100 303 IPR002035 -
Vivi3g03990 444 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03990 Vivi-Chr3 69155440 69159438 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03990 K16280 - gmx:100809850 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03990 3 69155440 69159438 Vivi3g03990 3 69155440 69159438 ECH