LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g03951	ATGGCCTCAGCTTCGCAAAAGACGACGTCACCATCGCCTTCTCCTTGTTGTCCCCCTCGCGACTCTTCCCGCTTAGCCGCCGCTCCTGCCGCCGCCGTCAAATCGGATCGCCTCCCTAACACTGTTGCCTTGATTCGTGCAATCGATTCGATTCCTGAATCGAATCCCACCAATGTCCCTTCTGCTAAGGGAATCCCTTCAATGACAAGGCCTCAGTCAAGTCATCCTTTGGACCCTTTAACTGCGGCAGAAATTTCTGTGGCAGTGGCAACTGTGAGGGCTGCTGGAGCCACTCCAGAGCTTAGGGATAGTATGCGCTTCATTGAAGTAGTTTTGCTGGAACCAGATAAAAATGTTGTTGCACTGGCAGACGCTTATTTTTTTCCACCTTTCCAACCATCATTACTTCCTAGAAGTAAAGGGGGCCCTGTAATTCCCACTAAACTCCCTCCAAGATGTGCTAGGCTTGTTGTTTACAATAAGAAATCAAATGTGACCGCTCTGTGGATTGTTGAATTATCGCAAGTTCATGCAGTAACTCGGGGTGGCCATCATCGTGGAAAAGTAATTTCATCACGTGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAATATGCAGAATGCGAGGCTGTTGTTAAAAGTTTTCCCCCTTTTATAGAAGCTATGAAGAAAAGGGGTATTGAAGATATGGATCTTGTAATGGTTGATCCCTGGTGCGTTGGATATCACAGTGAAGCTGATGCTCCTGGCAGAAGACTTGCCAAACCGCTCCTATTTTGTCGATCTGAGAGTGACTGCCCTATGGAAAATGGTTATGCCCGCCCAATCGAGGGTATCTATGTCCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGACCGTAAACTTGTTCCTTTGCCTCCTGTTGATCCCTTGAGAAACTATACTCCCGGTGAATCCAGAGGTGGCTCCGATAGAAGTGATGTAAAACCTTTACAAATTGTTCAACCTGAAGGTCCAAGCTTTCGTGTCAACGGCTATTTTGTTGAATGGCAGAAGTGGAATTTGCGTATTGGATTCACACCCAAAGAAGGTTTGATCATCTATTCTGTTGCATATGTTGATGGTAGTCGAGGGAGAAGGCCGGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTACCCTATGGAGATCCAAACGAGCCTCATTATAGGAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAAAATGCACATTCCCTCAAAAAGGGATGTGATTGTTTGGGCTACATCAAATATTTTGATGCTCACTTCACAAATTTCACGGGTGGAGTGGAAACTATAGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGGATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCCGAAGTCCGAAGGTCTAGAAGACTTTCAGTTTCTTTTGTATGCACGGTGGCCAACTATGAGTACGCCTTTTTTTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTCAAGCTGACTGGAATTCTCAGCTTAGGAGCCTTGATGCCTGGAGAATATCGAAAATATGGAACCATGATTGCACCAGGTCTATATGCTCCAGTTCATCAACACTTTTTTGTTGCTCGCATGGACATGTCTGTTGATTCTAGACCGGGTGAAGCTTTGAATCAGGTTGTGGAGGTCAATATGAAAGTTGAAGAACCTGGTGAAAATAATATTCACCATAATGCGTTCTATGCTGAAGAGACTTTGCTCAAATCTGAATCCGAAGCAATGCGTGATTGCAATCCTTTGACTGCTCGACATTGGGTTGTTAGGAACACAAGAACCGGCAACAGAACTGGACAATTAACAGGCTACAAGCTGGTGCCAGGCTCAAACTGCTTACCATTGGCAGGTTCTGAGGCCAAATTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATGTTTGGGTAACATCATATTCACGAGATGAAATGTTTCCTGGAGGAGAATTTCCCAATCAAAATCCGCGAGCTGGTGAAGGACTTGCTACATGGATTAAGCAAAACCGGCCTTTGGAAGAAACCAATATAGTTCTTTGGTATGTATTTGGAATCACACACGTCCCTCGTCTAGAAGACTGGCCTGTTATGCCAGTTGAACACATTGGCTTTATGCTCATGCCTCATGGATTCTTCAATTGTTCCCCTGCAATAGATGTCCCGCCTAATTCATGTGAAGCGGAATCTAAAGACACTGACATCAAGGATAATGGTGCTTCTTCGAAGCCGATTCAGAATGGATTATCATCAAAGCTTTAG	2319	0.4459	MASASQKTTSPSPSPCCPPRDSSRLAAAPAAAVKSDRLPNTVALIRAIDSIPESNPTNVPSAKGIPSMTRPQSSHPLDPLTAAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKNVVALADAYFFPPFQPSLLPRSKGGPVIPTKLPPRCARLVVYNKKSNVTALWIVELSQVHAVTRGGHHRGKVISSRVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEADAPGRRLAKPLLFCRSESDCPMENGYARPIEGIYVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGESRGGSDRSDVKPLQIVQPEGPSFRVNGYFVEWQKWNLRIGFTPKEGLIIYSVAYVDGSRGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFVCTVANYEYAFFWHFYQDGKIEAEVKLTGILSLGALMPGEYRKYGTMIAPGLYAPVHQHFFVARMDMSVDSRPGEALNQVVEVNMKVEEPGENNIHHNAFYAEETLLKSESEAMRDCNPLTARHWVVRNTRTGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNVWVTSYSRDEMFPGGEFPNQNPRAGEGLATWIKQNRPLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLMPHGFFNCSPAIDVPPNSCEAESKDTDIKDNGASSKPIQNGLSSKL	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g03951	772	FunFam	Amine oxidase	205	308	-	-
	Vivi3g03951	772	SUPERFAMILY	Amine oxidase N-terminal region	199	316	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	FunFam	Amine oxidase	59	202	-	-
	Vivi3g03951	772	MobiDBLite	consensus disorder prediction	1	32	-	-
	Vivi3g03951	772	SUPERFAMILY	Amine oxidase catalytic domain	323	742	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	MobiDBLite	consensus disorder prediction	53	76	-	-
	Vivi3g03951	772	Pfam	Copper amine oxidase, N3 domain	200	303	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	MobiDBLite	consensus disorder prediction	758	772	-	-
	Vivi3g03951	772	MobiDBLite	consensus disorder prediction	743	772	-	-
	Vivi3g03951	772	PANTHER	COPPER AMINE OXIDASE	70	751	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	Gene3D	Copper amine oxidase, catalytic domain	316	742	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	Pfam	Copper amine oxidase, enzyme domain	329	738	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	SUPERFAMILY	Amine oxidase N-terminal region	73	201	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	Gene3D	-	60	202	-	-
	Vivi3g03951	772	Pfam	Copper amine oxidase, N2 domain	75	164	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Vivi3g03951	772	FunFam	Amine oxidase	319	744	-	-
	Vivi3g03951	772	Gene3D	-	204	307	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g03951	Vivi-Chr3	68475250	68481449	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g03951	K00276		-	gmx:100798722	1375.53

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g03951	3	68475250	68481449	Vivi3g03951	3	68475250	68481449	ECH