Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03948 ATGGGTAGCGGTGAAATGGGAGTTGCAGAGAGCGACGGTGCTTCGCTACCCTCAATCGGAACCGACGCAATGAAGCGAAGAGTAACCTACTTCTACGAACCAACCATCGGCGATTACTACTACGGTCAAGGCCACCCCATGAAACCCCACCGTATACGCATGGCTCACAATCTCGTCATCCACTACGCACTCCACCGTCGTATGCAAATCAACCGTCCTTTCCTAGCCGGTTCCGAAGACATCCGCCGTTTTCACGCCGACGACTACGTCGAGTTCCTTTCCTCCGTTTCGCCGGAGATCCTTTCCGAGAGTTCTCACTCTCATTATCGTCAGCTTAAGCGGTTCAATGTTGGTGAAGATTGTCCGGTGTTCGATGGACTTTTTCCGTTCTGTCAGGCCTCGGCTGGTGGATCGATTGGTGCTGCTGTGAGGCTTAATCGCGGTGATGCTGATATTGCTATCAATTGGGCTGGGGGTTTGCATCATGCTAAGAAAGCTGAAGCCTCGGGGTTTTGCTATGTTAATGACATTGTTCTCGGTATTCTCGAGCTTCTTAAAGTTCATAGGCGTGTGGTGTATGTTGATATTGATGTCCACCATGGAGATGGCGTTGAGGAGGCATTTTACACTACTGATAGAGTGATGACAGTGTCTTTTCACAAGTTTGGCGATTTTTTCCCAGGAACTGGGCATATTAAAGACACTGGGGTGGGCTCTGGAAAGGACTATGCTGTAAATGTTCCTTTGAATGATGGAATGGATGATGAGAATTTCCGTGCTCTGTTTCGTCCCATCATGCAAAAAGTCATGGACGTATATCAACCTGATGCCGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGATAGGCTCGGTTGCTTCAACTTGTCTGTGAAAGGTCATGCAGACTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGAGGATACACAGTACGGAATGTTGCTCGTTGTTGGTGTTATGAGACAGCAGTCGCAGTAGGAGTGGAGCCTAGTAATAAGTTGCCATACAACGAATATTATGAATATTTTGGCCCAGACTATACACTTCACGTTGAACCAAACAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATCAGGAACATGTTACTTGAACAAATTTCCAGACTTCCTCATGCACCCAGTGCACCTTTTCAGACAACACCGCCAACTGTACAAGTTCCAGAAGAGGAAGACGAGGACATGGATATGAGACCAAAACCTCGCATATGGAATGGTGAAGATTATGATTCTGAAGACGATGATGAATATGAAGATGAGAAGGCCAGTATAAGGAGCTCAAATTTAACTGCCCATATGAGGCGTTCAGCAGTTCATATGGAAGAAGACAAGCCAGATGTTAAGCCTGATGTGCATTCGTCGTCGTCCTCCTAA 1446 0.4661 MGSGEMGVAESDGASLPSIGTDAMKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLVIHYALHRRMQINRPFLAGSEDIRRFHADDYVEFLSSVSPEILSESSHSHYRQLKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVRLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVVYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGSGKDYAVNVPLNDGMDDENFRALFRPIMQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNKLPYNEYYEYFGPDYTLHVEPNNMENLNTPKDMEKIRNMLLEQISRLPHAPSAPFQTTPPTVQVPEEEDEDMDMRPKPRIWNGEDYDSEDDDEYEDEKASIRSSNLTAHMRRSAVHMEEDKPDVKPDVHSSSSS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03948 481 Pfam Histone deacetylase domain 45 338 IPR023801 -
Vivi3g03948 481 PIRSF HDAC_I_euk 10 477 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 CDD HDAC_classI 31 340 - -
Vivi3g03948 481 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Vivi3g03948 481 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Vivi3g03948 481 PRINTS Histone deacetylase superfamily signature 158 181 IPR000286 -
Vivi3g03948 481 SUPERFAMILY Arginase/deacetylase 26 393 IPR023696 -
Vivi3g03948 481 Gene3D Histone deacetylase domain 18 406 IPR037138 -
Vivi3g03948 481 MobiDBLite consensus disorder prediction 459 474 - -
Vivi3g03948 481 FunFam Histone deacetylase 24 405 - -
Vivi3g03948 481 MobiDBLite consensus disorder prediction 417 431 - -
Vivi3g03948 481 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PRINTS Histone deacetylase signature 115 132 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PRINTS Histone deacetylase signature 136 156 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PRINTS Histone deacetylase signature 236 249 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PRINTS Histone deacetylase signature 253 271 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PRINTS Histone deacetylase signature 177 193 IPR003084 GO:0004407|GO:0016575
Vivi3g03948 481 PANTHER HISTONE DEACETYLASE 2-RELATED 20 354 - -
Vivi3g03948 481 MobiDBLite consensus disorder prediction 395 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03948 Vivi-Chr3 68423030 68428583 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03948 K06067 - gmx:100801159 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03948 3 68423030 68428583 Vivi3g03948 3 68423030 68428583 ECH