Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03939 ATGGATCCAGAACTTCAAAATTCGGAAAATAGCGATTCTGTCTTTGTTTGGGACGAAAGTTCGCAGCTTTACTTCCACGCCAGTAGTGGATTTTATCATGACCCTAATGCTGGTTGGTACTATAGCACCACTGACGGTGTTTATTACAAATTTGAAGATGGAAATTATGTACCTTTAGATTCCAATAAGGATAATTGTGAAGAAACATATGTATGCAAGGAAACCAAACCCGAAAGCCCTTGGAAAGTACATGACATTAACAACGAGAATTGCCCTTCTTTTATCGGTTACGGATTTGAAACTAACCAAGATGCCGGAACCTTGGCCAAGGAAGCAGCGGTTGTTCTGTCGACAATGTTACAGTATGTAGATGTCTTTGTAATAGATGCCCCGAACTCCACCAACAGTCCAACTTGTGAAAACCCTCCACCACCATCAGAATGGTTGGAGGATACACTGATTGACCTTTACTTATCTGGCTACAACAACGTAGCACTCAGTGCTGCTGATACAGTGACAGTGCCCGTGGAAACCAATGGATATAACTCCGCGTTAGAAGCTTACAGCAACACTTATGAAGTGGAAGGCGAATGGAACACAGGTCTGGAGGATGAAAACGGCATGGCTGATGATAAAAGAATTGTAGATGAAGTCGTAGCTTACAGTGATATGTATGAACTTGAAGAAGGTGAGTGGATCCCAGATACAGAGGATGAAAATCACATAGCTGATACAAGTACCCTAGATGAAGGCATGTTGTTTGATGAAGAAAAATGGAGAGCTCAGTATGGTCAAGTCACTGAATCAAGGAAAGATTTGGTTTTAGAGTTTCCAGCTGTGGACTTGTGGGATTGGGAAATGGTTAGAGCTTCCAAAAAAGATGAAAAGAGTAGGGTGGCAAAGTTGGTTGGAAGACTGGTTAAACAATCTGCAAAGCGACATCCATCTATCTCATCTGGTGAAAAGAAATTTAAATCTGCTCCAATATGTGAAGTGCATCTCGATCTGGTACGCGTCAAAACAGGACAAGTGTATAGATTGCGAAATCCTAGTGCAAGATATGTGGCTTCATTATCAAGTTATGATTCTTCCGATCCAACAAAAAATTGGGATTTTCCTCAGATATCATCTAATACAAATAGCGCACTTGTCTCCAAGTCCAGTGAAAGTACTCCATCCACTTCAAATGAAATTTCTACAGAGAAAGATTTGCCTATGTTGCCAAGTCAACTTTCTGCATCCAAGCAAATAAAAAGTCAATACAGAGATCGTGCGGCAGAAAGAAGAATCTTGCATGGTGGCTTTGGTGTGGGTCCAGGACAGAAGAATCTTGGTGGTGGTTATGATACGCCACCATCACCTGATGCTAGTCCTCAAGAAGCTAAAGAAGAGGCCTTGAAGATGTCATTTGGACCGGGTAGTTATGCCAGGAAACTTCTAGAAGGCATGGGCTGGAAGGAGGGAGAAGGGCTTGGCAACTCAACAAAGGGCATGGTGGAACCTATTCAACCAGTTGGAAACACTGGCAGTGCAGGCTTGGGATGGCCTCATCGAAATTTTCAAAAGGGTCAAGGCTAA 1578 0.4252 MDPELQNSENSDSVFVWDESSQLYFHASSGFYHDPNAGWYYSTTDGVYYKFEDGNYVPLDSNKDNCEETYVCKETKPESPWKVHDINNENCPSFIGYGFETNQDAGTLAKEAAVVLSTMLQYVDVFVIDAPNSTNSPTCENPPPPSEWLEDTLIDLYLSGYNNVALSAADTVTVPVETNGYNSALEAYSNTYEVEGEWNTGLEDENGMADDKRIVDEVVAYSDMYELEEGEWIPDTEDENHIADTSTLDEGMLFDEEKWRAQYGQVTESRKDLVLEFPAVDLWDWEMVRASKKDEKSRVAKLVGRLVKQSAKRHPSISSGEKKFKSAPICEVHLDLVRVKTGQVYRLRNPSARYVASLSSYDSSDPTKNWDFPQISSNTNSALVSKSSESTPSTSNEISTEKDLPMLPSQLSASKQIKSQYRDRAAERRILHGGFGVGPGQKNLGGGYDTPPSPDASPQEAKEEALKMSFGPGSYARKLLEGMGWKEGEGLGNSTKGMVEPIQPVGNTGSAGLGWPHRNFQKGQG 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03939 525 MobiDBLite consensus disorder prediction 487 525 - -
Vivi3g03939 525 Pfam OCRE domain 13 58 IPR041591 -
Vivi3g03939 525 Pfam G-patch domain 474 514 IPR000467 GO:0003676
Vivi3g03939 525 CDD OCRE 15 58 - -
Vivi3g03939 525 MobiDBLite consensus disorder prediction 380 419 - -
Vivi3g03939 525 SMART G-patch_5 470 516 IPR000467 GO:0003676
Vivi3g03939 525 ProSiteProfiles G-patch domain profile. 472 518 IPR000467 GO:0003676
Vivi3g03939 525 PANTHER RNA-BINDING PROTEIN 5 517 - -
Vivi3g03939 525 MobiDBLite consensus disorder prediction 380 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03939 Vivi-Chr3 68234407 68237964 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03939 - - psat:127083673 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03939 3 68234407 68237964 Vivi3g03939 3 68234407 68237964 ECH