Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03936 ATGAAGGCAACATTGAGATACTTAGCAGGAATTGCAGGGCCTAGTGGTTTTGGCTCAAATTCAACTGCTGAACATGTTACTCAAAACTGCTCTCAGTTTCTTCCTTCCAATCTAACTGCTCTCATCACTGGTGGCACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTATCAAAAAGAGGAGTGAGAGTTGTGATTGGTGCAAGAGATTTGAAGAAAGGAAGAGAAGTGAGAGAGAGTATTCAAAAAGAGAGTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTTGTTCTGTACAAAGATTTTGTTCTGAGTTTTTAGCTTTAAATCTTCCACTTAATATTCTAATAAACAATGCTGGCATATTCTCTCAAGATTTGGAATTCTCTGAAGACAAAATTGAGATGACATTTGCTACAAATTACTTAGGACATTTTTTGTTAACAGAAATCTTACTAGACAAAATGATTGAAACAGCAGAAAAAACAAGTTTTGAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAGAAATGGTTTTTGTTTCACACACATACTCAATGGAAAAAACTATAATGGAACTCGAGCTTACGCGCAATCGAAATTGGCGAATATTTTGCATGCCAAAGAAATAGCCAGACAACTCAAGGCAAGGAATGCAAGAGTGACTATGAATGCAGTTCACCCTGGTATTGTGAAGACAAGAATTATTAACAAGGGCTTAATAACAGATTCCTTATTTTTCATTGCATCAAAGTTGCTGAAATCTACACCACAGGGTGCATCAACAACATGTTATGTGGCTTTGAGTCCAAAAATAGAAGGGGTGAGTGGAAGATACTTTACAGATTGTAATGAGAGTAAGTGTTCTCGCTTAGCGAACGATGAATTAGAAGCTCAGAAGTTATGGAACAATACTCATGCATTGCTTCAAAAACGGCTGCATCAAGCGACAATTTGA 987 0.3708 MKATLRYLAGIAGPSGFGSNSTAEHVTQNCSQFLPSNLTALITGGTSGIGAETARVLSKRGVRVVIGARDLKKGREVRESIQKESPNAEVILLEIDLSSFCSVQRFCSEFLALNLPLNILINNAGIFSQDLEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTSFEGRIINVSSVIHSWVKRNGFCFTHILNGKNYNGTRAYAQSKLANILHAKEIARQLKARNARVTMNAVHPGIVKTRIINKGLITDSLFFIASKLLKSTPQGASTTCYVALSPKIEGVSGRYFTDCNESKCSRLANDELEAQKLWNNTHALLQKRLHQATI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03936 328 Gene3D - 33 324 - -
Vivi3g03936 328 CDD retinol-DH_like_SDR_c_like 39 312 - -
Vivi3g03936 328 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Vivi3g03936 328 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Vivi3g03936 328 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Vivi3g03936 328 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Vivi3g03936 328 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Vivi3g03936 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Vivi3g03936 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Vivi3g03936 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Vivi3g03936 328 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Vivi3g03936 328 Pfam short chain dehydrogenase 39 180 IPR002347 -
Vivi3g03936 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 297 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03936 Vivi-Chr3 68152037 68154375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03936 41 245 Acyl Lipid Metabolism Gene Families AT1G63380 28.774 1.32e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03936 - - gmx:100801384 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03936 3 68152037 68154375 Vivi3g03936 3 68152037 68154375 ECH