Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03519 ATGGGGAAGAAAACAAAAAAGAAGAGTCGAAGTGTTGTTAAGTCGGGAGTTGCTGTACCTTTGTTGCCGAAAAGTGTTACGGAATCGGAAAATCCAACTATTGAGTCTGTTGATGAGGGGGTTTCAGTTACAAAAGAGAGAAACTCTTGTCCTCATCTTGTTAAAGGTGTGAAATTAGATGTATTGTCGGGTAAGATTGGGTCTTCTAGATCCATAAGGTGTGAAGATTGTAGGGAAGGGGCGGCTGATAGGAGGGGTGGTAAAGGAAAAGGTAAACATGTGAAGAAGAAAGGTGGTGTATCATTGGACTCCAAACCAGATTCGAAGTCTATATGGGTTTGTTTGGAGTGCGGCCACTATACCTGTGGAGGTATGGGGTTACCAACAGCCCATCATTGTCATGCTGTTGGGCATTCAAGGAAAACCCGACATCCATTAATGGTTAATACCGAAAAACCTCAACTTTGTTGGTGTTTTCCTTGCAACATGCTTATTCATGTTGATAAAATTGAGAAAACAGATGAAACAAGTCATATTTTACCTGATGTTGTGAAATTGTTAAAAGGACGATCATCGGAAAAATCGTTGGTGGTTATTGAAGATGTTTCCATTGGGAGTGGCAGTGTTACTGCAGAAATTAAGTCAGGATCTCTGTCCATAAGTGATTCCCATGGACAAGGTGGTTATGTAGTTCGAGGCATGGTTAATCTTGGGAACACTTGTTTCTTTAATTCAATCATGCAAAATTTGCTTGCTATGAATAAATTGCGGGATGATTTTCTAAAGATTGATGCCCCTGTTGGGCCACTGGTCAGTTCGTTGAAGAAGTTGTTCACCGAAACAAACCCAGAATCTGGATTCAGAAACATTATAAACCCAAGATCCTTTTTTGGTTGTGTATGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAACATGACAGTCACGAATTGCTCCGTTGTCTACTGGATGGGTTGAGTACCGAAGAACTAGCAGGAAGGAAACAGAATGGTACTCTCAAAAGAGATGGAACCTCTTCCAATACTTTAGTTGATGCCTTATTTGGGGGTCAGATCTCTAGTACTGTATGCTGTAATGAATGCAGGCATTCCTCAACAGTGTATGAGCCTTTTTTAGATCTCTCCCTTTCTGTTCCAACTAAGAAACCTCCGTCTCGGAAGGCTCCCCAAGTACCCCGAACGAAAAAGACAAAACTTCCACCAAAAAGATTAGGAAAGTCTCGAGTCAAAGTTAGCAAGGATACTGATCCTTTACCCGTTCAAGATGTACCTAGCCAATCATCCAGCCATGAATCATCTTGCCCTGATCAGTCTGTGATATCAGTATCTGGGGAAATGGTGGTTTCTTCTGCTGATTCTACAGTATTAGGCTCTGAAGAAGTAAGCAGCGCTGGCAATAAAGAGGACTTATCTCCACTTAATTTGGTAACTGTTGGAGAGTCTCAACAAATTCAAGTGCTTGACAGTGTTGCAAATAAAACGACTGGTTCATCAGATGATTTTGCATGGTTGGATTATGTAGAAGCTGAAACTGTAATAGATGAATATGCTTCTATATCTGAGAAGGAAGATGCACCGGAGGTACAGGACTCTGAGAACAAGGATGAGCTTTTGGCTGTATTTCCTGAACAAGCTAGTTGTGAAACCAGTGGTCCTGTTTGTTTCCCTCAGGAGTATCAAAACCTAAGACCTGATTTTTCTTCATCAAATGTGTGGGAAGACGAGGCTCCTATACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCAGTCGGGGACATCATGGGAAGAGAGGGTGGTGAGGACTCCTCATCTGTTTTGGGGGGTGGTCCAGAAGAATCAGAGTTTGATGTCTTTGGTGGCTTATTTAATGAACCTGAGGTTGTTGCTGGGCCTGCTCCCAGACCTTCTTCATCCGGTGATGTGGAAGCTGTGACCATCATTAGAAACATCAGTGAATCTGATCCAGATGAAGTAGATGATACAGATTCTCCAGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTTTCTGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAATCCTCCAACGCCAAAAGAAGAAAGCGAAAAAGCAGGCAAGAATTCTATCTGATGGAAATGTGAGTGGTAGTCATGATGAATCATGTCATGCATCTAACTCATGTTCGTGTTCTCTAAAAGTCAATAGTAGAGGAAATGGAGATATTAAAAGTGACAAGAATATAGAAAGTTCAGTTTCACATGTTCAGCATGGCCCAGAGCTGCATAATGGTGAATTACAGTCTTCATCTTTTCAACAAGCTAGCAAGGAAGAAAGCTGCAATGATTCAGCCGCAGATTCTTGTACTTCTGGAAATGTCCAACGAGATGCTCCAATGTCAGATAATGATGATAATGACTCAGAAGAATGCAGCGACAAAGAGACCGAATTAGAAAGCATGAGAGTGAATAGGGATGCAACTAAGAGGGTCCTCATTTATAAAGCCCCACCTGTTTTGACCATTCATCTAAAGAGATTCAGCCAGGATGCTCGTGGCCGCTTAAGTAAATTAAATGGTCATGTTGACTTCAGAGAAACATTGGATCTAAGACCCTATATGGACCCCAGGTGTATAAATGAAGAAAAGTATGAATACCAGTTGGTTGGTATAGTGGAGCACTCGGGAACCATGAGAGGGGGTCATTATGTTGCTTACGTTAGAGGGGGCCAGAAGAACCGAGAGAAGGTCGATAATAAAGAAAACGAGCATGTGAATTCCACATGGTATCATGCGAGTGATGCATATGTGCGTGAAGTTTCCCTTGATGAAGTTCTTCGATGTGAGGCATACATTTTGTTTTATGAAAGAAATTGA 2916 0.4156 MGKKTKKKSRSVVKSGVAVPLLPKSVTESENPTIESVDEGVSVTKERNSCPHLVKGVKLDVLSGKIGSSRSIRCEDCREGAADRRGGKGKGKHVKKKGGVSLDSKPDSKSIWVCLECGHYTCGGMGLPTAHHCHAVGHSRKTRHPLMVNTEKPQLCWCFPCNMLIHVDKIEKTDETSHILPDVVKLLKGRSSEKSLVVIEDVSIGSGSVTAEIKSGSLSISDSHGQGGYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDDFLKIDAPVGPLVSSLKKLFTETNPESGFRNIINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGTLKRDGTSSNTLVDALFGGQISSTVCCNECRHSSTVYEPFLDLSLSVPTKKPPSRKAPQVPRTKKTKLPPKRLGKSRVKVSKDTDPLPVQDVPSQSSSHESSCPDQSVISVSGEMVVSSADSTVLGSEEVSSAGNKEDLSPLNLVTVGESQQIQVLDSVANKTTGSSDDFAWLDYVEAETVIDEYASISEKEDAPEVQDSENKDELLAVFPEQASCETSGPVCFPQEYQNLRPDFSSSNVWEDEAPIQVQNSEVLLLPYKEESSSVGDIMGREGGEDSSSVLGGGPEESEFDVFGGLFNEPEVVAGPAPRPSSSGDVEAVTIIRNISESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKILQRQKKKAKKQARILSDGNVSGSHDESCHASNSCSCSLKVNSRGNGDIKSDKNIESSVSHVQHGPELHNGELQSSSFQQASKEESCNDSAADSCTSGNVQRDAPMSDNDDNDSEECSDKETELESMRVNRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVDFRETLDLRPYMDPRCINEEKYEYQLVGIVEHSGTMRGGHYVAYVRGGQKNREKVDNKENEHVNSTWYHASDAYVREVSLDEVLRCEAYILFYERN 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03519 971 Gene3D Cysteine proteinases 650 728 - -
Vivi3g03519 971 Gene3D Cysteine proteinases 730 971 - -
Vivi3g03519 971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 183 IPR013083 -
Vivi3g03519 971 ProSiteProfiles Zinc finger UBP-type profile. 48 184 IPR001607 GO:0008270
Vivi3g03519 971 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 39 971 - -
Vivi3g03519 971 Gene3D Cysteine proteinases 216 436 - -
Vivi3g03519 971 SMART Zf_UBP_1 106 155 IPR001607 GO:0008270
Vivi3g03519 971 MobiDBLite consensus disorder prediction 395 413 - -
Vivi3g03519 971 MobiDBLite consensus disorder prediction 764 833 - -
Vivi3g03519 971 SUPERFAMILY RING/U-box 49 170 - -
Vivi3g03519 971 Pfam Ubiquitin carboxyl-terminal hydrolase 233 968 IPR001394 GO:0004843|GO:0016579
Vivi3g03519 971 FunFam Ubiquitinyl hydrolase 1 45 188 - -
Vivi3g03519 971 MobiDBLite consensus disorder prediction 765 812 - -
Vivi3g03519 971 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 899 916 IPR018200 GO:0004843|GO:0006511
Vivi3g03519 971 MobiDBLite consensus disorder prediction 383 445 - -
Vivi3g03519 971 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 232 971 IPR028889 -
Vivi3g03519 971 Pfam Zn-finger in ubiquitin-hydrolases and other protein 74 167 IPR001607 GO:0008270
Vivi3g03519 971 SUPERFAMILY Cysteine proteinases 231 970 IPR038765 -
Vivi3g03519 971 MobiDBLite consensus disorder prediction 81 105 - -
Vivi3g03519 971 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 233 248 IPR018200 GO:0004843|GO:0006511
Vivi3g03519 971 MobiDBLite consensus disorder prediction 426 445 - -
Vivi3g03519 971 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03519 Vivi-Chr3 59019862 59024317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03519 840 970 Miscellaneous Gene Families AT2G24640 36.567 4.52e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03519 K11844 - gmx:100780952 1321.22