Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03511 ATGTGCTCAATCTCATCCTACGCAACATTTTCAACTCTTCTTAGTTCGTCTTCATCTTCTTCTTCATGTTCATTCCCTTGTTCCTCCGCCAAAACCACCATCTTTACCCTCTCAACCCCAATCCCCACAACCACCATCTCTAACGGATCCGTCTCAGCCACACCCAAACATGTCTGGACCCGAACCCCACGTTCCCCATTTCCCAACACCAACAAACACCAACGTCGCACCAGAACCCAGCAACAACAAAAACAACAATACGAACCCCCTTATCTAGACCGCAGCGTCGACATGAACGAACTCTCAACCTCAATCAAACAAACCCACAACATCGAACAACTCTACGCACTCATGTCCCCTTACAATAACAAACAACTCTCAATCCGTTTCATGGTCTCCATCCTCTCCCGTGAACCCGATTGGCAACGCTCTATCGCAATTCTCGACTGGATGGACGAGATAGCTCAATACTCACCTTCACTCTCCGCTTACAACGTCGTCCTACGTAACGTACTTCGCGCTAAACAATGGCAGTTTGCACACGGACTGTTCGACGAAATGCGTCAAAAGGGTCTTTCCCCTGATAAGTACACTTACTCCACACTCATTACGTGTTTCAGTAAACAAGGTTTGTTTGATTCATCTTTCTTTTGGTTACAACAGATGGAGCGTGACAAAGTTCCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGGAAACTGGGTGATTATTCAAAAGCCATTTCGATTTTCAATACGTTGAAAGCTTCTGCTAATATTGTCCTTGATCTTATAGCTTATAATACTATGATTAGTGTGTTTGGTAAGGCGAAGCTCTTAAAGGAAGCTCGTCTTCTTATTCAAGAGATGAGGGATAATGGTGTTAACCCGAATACTACTAGTTACTCGACGCTTCTTGCGATTTATGTTGATAATCAGAAGTTTGTCGAGGCGCTTTCTTTGTTCGCGGAAATGAATGAAGTTAAATGTCCGATTGATCTTACTACGTGTAATATTATGATTGATGTTTATGGTCAGCTTCAAATGATTAGGGAGGCTGATTGCTTCTTCTGGGGTATGAAGAAAATGGGAATTGAACCTAATGTGGTTAGTTACAATACTATCTTGAGGGTTTATGGAGAGGCTGAGCTATTCGGGGAAGCTGTTCATCTTTTTAGTTTGATGCTAATGAAAGGTATACCACAGAATGTTGTTACATACAACACGATGATTAGTATCTATGGTAAATCTCTTGAAGATGAGAAAGCGACGAATCTCATTCAAGAAATGCAGAGTAGAGGTATTCAACCAAATGCCATCACTTACTCAACCATAATATCTATATGGGAAAAGGCAGGGAAATTGAACCGGGCAGCCATGCTGTTTCACAAGTTAAGGACTTCTGGAGTTAAAATTGATGAGGTACTATATCAGACAATGATTGTTGCGTATCAGAAAGCTGGATTAGTTGCGCATGCCAAAAGGCTACTTCATGAGCTCAAGCAAGAGGATAATGTTTCCAGGGAGACGGCAATCACAATACTTGCCAAAGCCGGTAAAGTTGACGAGGCTTTGTGGGTTTTCCGACAGGCTTTTGATGCGGGAGAGGTGAAAGATATATCTGTATTTGGGTGCATCATTGATATTTTCTCAAGGGACAGAAAGTATGCACATGTCGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCAGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTTGGAAAGCTGCGGAAATTTGAGAGAGCAGGTGCTTTATATAAACAGATGTATGAAGAAGGGTGTGTTTTTCCGGACGAAGTTCATTTTCAAATGCTTGATTTATATGGCGCGAGTATGGATTTCAAGATGGTGGAATCATTGTTTGAGAAGCTAGATTCCAATCCCAGTATCAACAAGAAGGAGTTGCATTTTGTTGTTGCCAACATTCATGAAAGAGCAGGTAGATTTAATGATGCTTCCCGAATCATGAGCAGGATGAATCACAGAGCAATAAAAAGTTATGGTAATGCTTAG 2058 0.4159 MCSISSYATFSTLLSSSSSSSSCSFPCSSAKTTIFTLSTPIPTTTISNGSVSATPKHVWTRTPRSPFPNTNKHQRRTRTQQQQKQQYEPPYLDRSVDMNELSTSIKQTHNIEQLYALMSPYNNKQLSIRFMVSILSREPDWQRSIAILDWMDEIAQYSPSLSAYNVVLRNVLRAKQWQFAHGLFDEMRQKGLSPDKYTYSTLITCFSKQGLFDSSFFWLQQMERDKVPGDLVLYSNLIELSRKLGDYSKAISIFNTLKASANIVLDLIAYNTMISVFGKAKLLKEARLLIQEMRDNGVNPNTTSYSTLLAIYVDNQKFVEALSLFAEMNEVKCPIDLTTCNIMIDVYGQLQMIREADCFFWGMKKMGIEPNVVSYNTILRVYGEAELFGEAVHLFSLMLMKGIPQNVVTYNTMISIYGKSLEDEKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLNRAAMLFHKLRTSGVKIDEVLYQTMIVAYQKAGLVAHAKRLLHELKQEDNVSRETAITILAKAGKVDEALWVFRQAFDAGEVKDISVFGCIIDIFSRDRKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFERAGALYKQMYEEGCVFPDEVHFQMLDLYGASMDFKMVESLFEKLDSNPSINKKELHFVVANIHERAGRFNDASRIMSRMNHRAIKSYGNA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03511 685 Pfam PPR repeat family 159 207 IPR002885 -
Vivi3g03511 685 Pfam PPR repeat family 266 309 IPR002885 -
Vivi3g03511 685 Pfam PPR repeat family 406 449 IPR002885 -
Vivi3g03511 685 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 352 509 - -
Vivi3g03511 685 Pfam PPR repeat 478 506 IPR002885 -
Vivi3g03511 685 Pfam PPR repeat 584 609 IPR002885 -
Vivi3g03511 685 Pfam PPR repeat 545 573 IPR002885 -
Vivi3g03511 685 Pfam PPR repeat 515 533 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Vivi3g03511 685 Pfam Pentatricopeptide repeat domain 323 384 IPR002885 -
Vivi3g03511 685 Gene3D Tetratricopeptide repeat domain 435 508 IPR011990 GO:0005515
Vivi3g03511 685 Gene3D Tetratricopeptide repeat domain 360 434 IPR011990 GO:0005515
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Vivi3g03511 685 Gene3D Tetratricopeptide repeat domain 98 239 IPR011990 GO:0005515
Vivi3g03511 685 Gene3D Tetratricopeptide repeat domain 240 356 IPR011990 GO:0005515
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Vivi3g03511 685 MobiDBLite consensus disorder prediction 46 91 - -
Vivi3g03511 685 SUPERFAMILY HCP-like 233 413 - -
Vivi3g03511 685 MobiDBLite consensus disorder prediction 46 89 - -
Vivi3g03511 685 Gene3D Tetratricopeptide repeat domain 509 683 IPR011990 GO:0005515
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vivi3g03511 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 443 477 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 584 613 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 163 195 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 408 442 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 304 336 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 339 372 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 197 229 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 269 302 IPR002885 -
Vivi3g03511 685 NCBIfam pentatricopeptide repeat 545 577 IPR002885 -
Vivi3g03511 685 PANTHER OS03G0856100 PROTEIN 501 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03511 Vivi-Chr3 58874084 58876676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03511 270 622 Miscellaneous Gene Families AT4G11690 23.737 2.45e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03511 - - vvo:131628821 1266.91