Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03508 ATGGTTTCTAACAAAAAGGTTACTGCATTACTACTTGTAATCTTAGCTGGTCTAGCCAGCTCAGATTTAACAAAAGACAGAAAAGACTGTGCTGACAAACTTGTTACTCTTGCTAGTTGTCTTCCATATGTTGGTGGTGATGCCAATACTCCCACTATAGATTGTTGCACCTCCCTTAAAGTAGTCCTTGACAAGACCAAAAAATGCATCTGCATCCTCATCAAAGATCGCAACGACCCCAAACTCGGCTTCACTTTGAATGCAACTCTCGCTGTTCAGCTTCCAAGTGCTTGTCACATACCATCTAATATATCTCAATGTGTAGATCTTTTGCATTTGTCACCAAAATCACCTGAAGCTCAGGTGTTTGAAGGACTTGGAAATTCTACCAAAATAAACAGTTCAACACCAGGTTCTGTTGAGAAGGGATCAAGTGCTGAGGAAAAGAGTGGTGCTGGATTGGGAAAGAGGTGGATGGTGGCAGAGATGGTTTGTGCTATTTTACCATTTGTTTTCATATCTCAGTTCTTCATCCTAGCTTGA 543 0.4107 MVSNKKVTALLLVILAGLASSDLTKDRKDCADKLVTLASCLPYVGGDANTPTIDCCTSLKVVLDKTKKCICILIKDRNDPKLGFTLNATLAVQLPSACHIPSNISQCVDLLHLSPKSPEAQVFEGLGNSTKINSSTPGSVEKGSSAEEKSGAGLGKRWMVAEMVCAILPFVFISQFFILA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03508 180 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 27 107 - -
Vivi3g03508 180 Pfam Probable lipid transfer 23 107 IPR016140 -
Vivi3g03508 180 CDD AAI_LTSS 37 100 - -
Vivi3g03508 180 Gene3D - 27 118 IPR036312 -
Vivi3g03508 180 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 11 144 IPR043325 -
Vivi3g03508 180 MobiDBLite consensus disorder prediction 127 148 - -
Vivi3g03508 180 SMART aai_6 30 107 IPR016140 -
Vivi3g03508 180 MobiDBLite consensus disorder prediction 127 143 - -
Vivi3g03508 180 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 108 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03508 Vivi-Chr3 58767477 58768556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03508 7 168 Acyl Lipid Metabolism Gene Families AT1G55260 43.373 1.43e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03508 - - pvu:PHAVU_001G268300g 228.024