Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03507 ATGACTGCAAAGTTTGATTCAATGTTTGCTTCTGAACCTCACAAGATGTCCGGAGCTACATCTACAACACCTCCTAGTGGTAGCCAAAAGCTCTCTATGTTTGCTGCCAAATCTGGATTTGTCATCCCCAAAAACAAGTTATTAGGATCGTTAGTTCCCATTTTACGAGGGGCTAAAAAAGACGGGGTCACTGGAGGCATCAATGAAGAAAGTTCAAAACAAATTGAGAGGAAATCGAGATGGGGGCCTGATCCAACACAGGATGCATCTGTCAGGAGGGCGAAGGTTTTGGCGTTGCAGATTCGAGTGGATCAAATTTCGAAGCAGTTGGAATCGGAAAATCTAGAGATTGGAGCCACTCAGAACCCACCATTGGTGGATGAGAACCCAGATGAGAGCAAGTCTGGCTCTCATATGAATAGCAAGGTGTCAGAAATGCTCGAACTCGAAAAGCGGGAAACAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACCTGGTTTTAAACCACTGTTGAAAGAACACAGTGTTCCTTTGCCTGTCCAAGAATATCCTGGGTACAAATTCATTGGTCTAATATATGGGCCTGGAGGTGATAATCAAAAGCGACTAGAGAAGGAAACTGGTACTAAGATAAAAATTCGTGGAACCAAAGCAGACACAGGCGAGAAAGGTGAAATTAAACCAGGTACTGATGTCCAGTGCAGTTATGAAGAGATGCATGTTAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACTGGGAGTTCAGCTGCTGGTTCCACACCTTCTGTATCTGTCTCCGGGGACAGCACTAATGGTCTGAATCAAAACCAAGATGGCCCCCCATCTCATGCGTATTCTTTATCTCTGGAAAACCAGGCCGTGTTTCAACCAGCAGCCACTACACAAATGCAAGGAAATCACTTTCAATACTCTGGTTCATGGTTTTCAGCTGCTCCATCTCACACCCCTTTATTTGCTTCTTCTGGCAGTGTAGTCCCTCCAAATCCACCACACCTTGCTAGAGCTCCCCATTTTTCATCACAGACAATGAGCCCTTCAAATATGATTTCAGCTTTTGGTGCTCAACCTACACCTAATACTGGATTCCACCCGATTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCGACACAATTCTTACAACATTCACAATGGACTCAAACAGCTCCTTTTGGTCACGTTGGGCCACCCAGAAATCCTTCTGTAATACCTGCACAGAATTTGTCAGCACCAACAAGTGCTTCACTTTCGTTTCCAGTTTCCTTAAGGCAACCGACACCAACAGGACACCTCCAGACATCAGTGTCTTCAATGCCTCAACCTATGTCTGGTATATCACCGTCACCAATAGCTAATCAGCCATCAACCCCTCAAGGTGTATCTTCTGGACTGAGTGGAGGACCCGTCAATATGGGGCCAATGGCTCCACCGACAGTCCCCCCTGCAAGACCTGTTTCTCTAGGTCCACAATCAGATGTTGAATATAAGCCACCCCAGCCAAATGTGGCGATGATGCCACGACCTGGAAGTATTCATCCACATCATGCAGGAATGTCACCAAGACCACCATCATCTCTGGGACCAATACCAGGAACCGTTCATTCAACTGGAAACCATTTATCAAGACCTGTTTCATTTCCATCGCCAGGAATATCCCCGTCATTTCCATTTGCTCAACAATCAGGAATGCCTAATTCTGCCTCTCACTACACCCACATAAACCCACTGGCCTCCATGCCTTCAAATTCTGGAAATTTTACTTTTCAAGAACAGCGACCCAATGCAGACTACTATCAAGTGGTTCCCAGACCAAACACTCAAGCTACTACTCAGGGAAGTACACAAGAGCCACCTTCCGGTCCCCGGCCTCCACCATTTGGGTTTGCTGTGGCTGATCAGCCTTTTCAAAGCTTTCCAAGGGCACAAGTCTCCAACCGGGTGGATCAAACTCAAGGTTATGCCTCTGCTACTCCGTTTGGTGGAAGACCGGGCTCTGTCTCATTTCCACCCCAACACCCTGCATTTCCCTATGCTGGCCAACCTTCACCAAGATCTCAAGTCCCACAAATTGGTATGAGGAACTTCATTCCCACCCCTCAAATGCCAAACTTGCCCAGTCCTGGGGTCCAAAGAGGTATGCACAATCAACAAAGCTATCCTGCTCAGGGAACATGGCCTATGAATCAGAAGTTTGGCAACAATCCCTCTTTGGCATCCAGTAAGCCAGCGTATCATGCAGACCAAATTTATGATCCCTTTTCACCCACATCTGTTGCATCTCCACACCAGAAAGGTAATCTTGGAAAATGA 2391 0.4596 MTAKFDSMFASEPHKMSGATSTTPPSGSQKLSMFAAKSGFVIPKNKLLGSLVPILRGAKKDGVTGGINEESSKQIERKSRWGPDPTQDASVRRAKVLALQIRVDQISKQLESENLEIGATQNPPLVDENPDESKSGSHMNSKVSEMLELEKRETIGEILKLDPSYKPPPGFKPLLKEHSVPLPVQEYPGYKFIGLIYGPGGDNQKRLEKETGTKIKIRGTKADTGEKGEIKPGTDVQCSYEEMHVNISADSFDKVDAAISIIELLISSVTGSSAAGSTPSVSVSGDSTNGLNQNQDGPPSHAYSLSLENQAVFQPAATTQMQGNHFQYSGSWFSAAPSHTPLFASSGSVVPPNPPHLARAPHFSSQTMSPSNMISAFGAQPTPNTGFHPIIPNQQFSMQAPPPTQFLQHSQWTQTAPFGHVGPPRNPSVIPAQNLSAPTSASLSFPVSLRQPTPTGHLQTSVSSMPQPMSGISPSPIANQPSTPQGVSSGLSGGPVNMGPMAPPTVPPARPVSLGPQSDVEYKPPQPNVAMMPRPGSIHPHHAGMSPRPPSSLGPIPGTVHSTGNHLSRPVSFPSPGISPSFPFAQQSGMPNSASHYTHINPLASMPSNSGNFTFQEQRPNADYYQVVPRPNTQATTQGSTQEPPSGPRPPPFGFAVADQPFQSFPRAQVSNRVDQTQGYASATPFGGRPGSVSFPPQHPAFPYAGQPSPRSQVPQIGMRNFIPTPQMPNLPSPGVQRGMHNQQSYPAQGTWPMNQKFGNNPSLASSKPAYHADQIYDPFSPTSVASPHQKGNLGK 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03507 796 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 179 270 IPR036612 GO:0003723
Vivi3g03507 796 MobiDBLite consensus disorder prediction 120 140 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 59 89 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 415 434 - -
Vivi3g03507 796 PANTHER RNA-BINDING PROTEIN RELATED 59 639 IPR045071 -
Vivi3g03507 796 Gene3D K Homology domain, type 1 171 295 IPR036612 GO:0003723
Vivi3g03507 796 MobiDBLite consensus disorder prediction 14 30 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 736 768 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 271 301 - -
Vivi3g03507 796 FunFam Splicing factor-like protein 1 isoform A 176 279 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 729 796 - -
Vivi3g03507 796 Pfam KH domain 191 262 IPR004088 GO:0003723
Vivi3g03507 796 MobiDBLite consensus disorder prediction 632 657 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 679 712 - -
Vivi3g03507 796 ProSiteProfiles Type-1 KH domain profile. 191 262 - -
Vivi3g03507 796 SMART kh_6 174 267 IPR004087 GO:0003676
Vivi3g03507 796 MobiDBLite consensus disorder prediction 443 492 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 443 519 - -
Vivi3g03507 796 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03507 Vivi-Chr3 58753324 58759889 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03507 K13095 - gmx:100777227 953.355