Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03498 ATGGCGAAGAAACGCGTTCCCGATTGGCTCAACAGTCCTATCTGGTCCTCCCCCTCCGACCACCACCGCTTTACCGCCGCCTTTGACCCGCCGGAACCTCCCTCTCCACCCCCTGTTACCGTCAATGAAGATCCTCCTTTAATTCAACATTCGCGAACCAATCACAATGGCATTGCCAGTTCATCTCCATCTTCTTCTTCATCCTCCGCTTCTACCTCCTCCGCCGATGATATGTCCGTCTCTCGTCGGGCCCAGTGCCAGGCCCAGTTGTTAGCCGAGTTATCTAGGAAGGTAATAGATATGCGGGAATTGAGAAGAATTGCTTCTCAAGGGATACCCGATTTTCCTGGTTTACGTTCTACTGTCTGGAAGCTTCTGCTAGGGTATCTACCACCAGATCACGCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCTCAATACAAACGTTTCAAACAAGACATTCTTATCAATCCTTCAGAAATCACGAGGAGGATGTGGGACTCTGCTAGTTATGATGCCGATGAACTCAAATGTGAGACCAGGTGCATGCTTCCTAGATCACAAGTCACTCACGAGGAACATCCTTTGAGTCTTGGCAAGACCAGCATTTGGAATCAGTTTTTCCAGGATACTGGTATCATAGAGCAGATTGACCGCGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTGTGGTGATTCTCAATTAGCAAAATCTAATCAGGAGGCCTTAAAGAACATATTAATTATTTTTGCAAAGTTGAACCCAGGTATTAGATATGTTCAAGGGATGCATGAAGTATTGGCTCCTTTATTCTATGTGTTCAGGAATGATCCGGACGAGGAAAATGCAGCCTTTTCTGAACCAGACACATTCTTTTGTTTTGTTGAAGTAATGAGTGGATTCCGAGATAATTTTTGTCAACAGCTTGACAATAGTGTTGTTGGAATTCGTTCGACTATAACAAGATTGTCTCATCTTTTGAGAGAACACGATGAAGAACTATGGCGTCATCTTGAGGTCACGACCAAAGTCAACCCCCAATTTTATGCATTTAGGTGGATTACTCTCCTCTTGACTCAAGACTTCAATTTTTCTGAGATCCTTCGGATTTGGGACACCCTTTTAAGTGATCCTGATGGTCTACAGGAGACACTTCTACGGATATGCTGTGCAATGCTAATTCTCGTTCGGAGGCGCCTCCTGGCGGGTGATTTCACTTCTAATCTCAAATTGCTGCAAAGTTATCCTTCTACAAACATTAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGTACAGTCAGTGTAA 1317 0.4457 MAKKRVPDWLNSPIWSSPSDHHRFTAAFDPPEPPSPPPVTVNEDPPLIQHSRTNHNGIASSSPSSSSSSASTSSADDMSVSRRAQCQAQLLAELSRKVIDMRELRRIASQGIPDFPGLRSTVWKLLLGYLPPDHALWSSELAKKRSQYKRFKQDILINPSEITRRMWDSASYDADELKCETRCMLPRSQVTHEEHPLSLGKTSIWNQFFQDTGIIEQIDRDVKRTHPDMHFFCGDSQLAKSNQEALKNILIIFAKLNPGIRYVQGMHEVLAPLFYVFRNDPDEENAAFSEPDTFFCFVEVMSGFRDNFCQQLDNSVVGIRSTITRLSHLLREHDEELWRHLEVTTKVNPQFYAFRWITLLLTQDFNFSEILRIWDTLLSDPDGLQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03498 438 MobiDBLite consensus disorder prediction 1 81 - -
Vivi3g03498 438 Gene3D - 82 137 - -
Vivi3g03498 438 MobiDBLite consensus disorder prediction 29 43 - -
Vivi3g03498 438 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 435 IPR035969 -
Vivi3g03498 438 ProSiteProfiles TBC/rab GAP domain profile. 113 381 IPR000195 -
Vivi3g03498 438 Gene3D - 317 437 - -
Vivi3g03498 438 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 92 340 IPR035969 -
Vivi3g03498 438 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 69 416 - -
Vivi3g03498 438 Pfam Rab-GTPase-TBC domain 213 402 IPR000195 -
Vivi3g03498 438 FunFam TBC1 domain family member 13 316 437 - -
Vivi3g03498 438 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 200 309 - -
Vivi3g03498 438 MobiDBLite consensus disorder prediction 46 81 - -
Vivi3g03498 438 SMART tbc_4 108 407 IPR000195 -
Vivi3g03498 438 FunFam TBC1 domain family member 13 198 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03498 Vivi-Chr3 58673782 58680094 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03498 K24796 - gmx:100778830 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03498 3 58673782 58680094 Vivi3g03498 3 58673782 58680094 ECH