Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03426 ATGTCGGAGATTGCCAGCACAGATCCCGAAGGTGTCGACGGAGTTCGCATGACATGGAACGTCTGGCCACGAAGCAAAGTCGAAGCCAGCAAGTGCGTCATCCCTCTCGCCGCCACCATCTCCGTGATCCGCCCTCATCCCGACATTCCCCGCCTCCCTTACGCCCCTCTCCGATGCAAAACCTGCACCTCCGCCCTCAACCCCTTCTCCCGTGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGTTATCAGCGCAACCATTTCCCTCCTCATTATAACGCCATCTCTGAAACCAATCTCCCTGGGGAACTTTACCCTCAATACACAACCGTCGAATATACAATTCCGCATGCCGATCCTAATCCTCCTCCTTCCCCTGTTTTTCTCTTCCTCCTTGATACTTGTATCATTGAGGAAGAGATCAATTATCTCAAATCGGCTCTCGGTCGTGCGATCGGGCTTTTGCCTGATAATGCTCTCGTCGGTTTTGTCTCCTTTGGGACTCAGGTTCAGGTTTATGAATTGGGATTCTCTGATATGTCTAAGGTTTATGTCTTTCGCGGTTCCAAAGAGATTCCGAAAGATCAGATTTTGGAACAGCTTGGTCTTGCTTCTTCTGCTGCTTCTGGAAGGAGGCCGATTAAGGGTGCTCCTTTCCCCAATTCTGGTGTTTCACGGTTTTTGTTGCCTGCTTCTGATTGTGAATACACTCTCAATGCGCTTTTAGAAGAATTGCAGAGAGATCAGTGGCCTGTTCCTCCTGGCAAACGTCCCGCTCGCTGCACCGGCGTTGCATTGAGTGTTGCATCTGGATTGCTCAGTGCTTGTGTTCCTGGGACTGGAGCTAGAATCATAACTTTGGTTGGAGGACCATGCACGGAAGGACCCGGCACGATTGTATCTAAAGATTTATCTGACCCAGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCGCCTTACTTTAAGAAAGCAGTCAAATTTTATGATGGTCTTGCAAAACAGCTGGTTAGCCAAGGTCATGTTTTAGATGTCTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCAGTTGAAAGAACTGGTGGCCTTGTTGTCCTGTCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGACGGGGAGCAATCTCTTGGTCTTTGTTTCAATGGAACTCTTGAGATAAATTGCTCAAAGGAAATCAAAATTCAGGGAATCGTTGGACCATGCACATCGATAGAGAAGAAAGGGCCTTCTGTTGCTGATACTGTCATAGGAGAGGGGAACACAACAATATGGAAGATGTGTGGTCTTGACAAGAGTACATGCTTGACTGTGTTGTTTGATCTTTCATCAAGTGATCGTTCAAATACTCCAGGTGCTGTCAACCCACAACTGTACCTGCAGTTCCTTACAAGTTACCAGGGGGCAGATGGTCAATTAGTGCTTCGTGTTACAACTGTAACTAGAAGATGGGTAGATAGTGCTGTTAGCTCTGAGGAATTGGTCCAAGGATTTGACCAGGAAACTGCTGCAGTGGTAATGGCTAGATATGCTTCTCTGAAAATGGAGACAGAGGAAACATTTGATGCCACCCGGTGGTTGGATAGGTTCCTCATTCGCCTCTGTTCTAAGTTTGGGGACTACCGCAAGGATGATCCATCATCTTTTACATTAAATCCATCATTTTCTCTTTTCCCCCAGTTTATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGATGAGACTGCATACTTCCGCATGTTGTTAAACCGTGAAAATATTAGTAATGCGGCTGTCATGATTCAGCCATCTCTAATATCATATTCATTTAATTCACTGCCTGCACCAGCTCTGTTGGATGTGGCTTCCATTGCTGCAGACCGGATTCTGTTGCTAGATTCATACTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCTTTTGCACAACTATTACGAGCTCCACAAGATGATGCCCACGCAGTAATTAGAGATCGGTTCCCTGTTCCTAGATTGGTAGTGTGTGATCAACATGGTTCCCAGGCTAGATTTTTATTGGCAAAGCTGAATCCGTCAGCAACATATAATAATGCGCACGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTCAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA 2292 0.4603 MSEIASTDPEGVDGVRMTWNVWPRSKVEASKCVIPLAATISVIRPHPDIPRLPYAPLRCKTCTSALNPFSRVDFTAKIWICPFCYQRNHFPPHYNAISETNLPGELYPQYTTVEYTIPHADPNPPPSPVFLFLLDTCIIEEEINYLKSALGRAIGLLPDNALVGFVSFGTQVQVYELGFSDMSKVYVFRGSKEIPKDQILEQLGLASSAASGRRPIKGAPFPNSGVSRFLLPASDCEYTLNALLEELQRDQWPVPPGKRPARCTGVALSVASGLLSACVPGTGARIITLVGGPCTEGPGTIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYDGLAKQLVSQGHVLDVFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIVGPCTSIEKKGPSVADTVIGEGNTTIWKMCGLDKSTCLTVLFDLSSSDRSNTPGAVNPQLYLQFLTSYQGADGQLVLRVTTVTRRWVDSAVSSEELVQGFDQETAAVVMARYASLKMETEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPQDDAHAVIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03426 763 Gene3D Severin 621 725 IPR029006 -
Vivi3g03426 763 Pfam Sec23/Sec24 helical domain 519 615 IPR006900 GO:0006886|GO:0006888|GO:0030127
Vivi3g03426 763 FunFam Protein transport protein SEC23 53 112 - -
Vivi3g03426 763 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 7 762 IPR037364 -
Vivi3g03426 763 FunFam Protein transport protein SEC23 516 637 - -
Vivi3g03426 763 FunFam Protein transport protein SEC23 127 400 - -
Vivi3g03426 763 SUPERFAMILY Helical domain of Sec23/24 519 621 IPR036175 GO:0006886|GO:0006888|GO:0030127
Vivi3g03426 763 Gene3D Sec23/Sec24 helical domain 516 760 - -
Vivi3g03426 763 Pfam Sec23/Sec24 beta-sandwich domain 401 505 IPR012990 -
Vivi3g03426 763 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 622 762 IPR036180 -
Vivi3g03426 763 Gene3D - 53 112 - -
Vivi3g03426 763 Pfam Sec23/Sec24 trunk domain 125 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Vivi3g03426 763 Pfam Gelsolin repeat 631 719 IPR007123 -
Vivi3g03426 763 SUPERFAMILY vWA-like 128 391 IPR036465 -
Vivi3g03426 763 FunFam Protein transport protein SEC23 621 725 - -
Vivi3g03426 763 SUPERFAMILY beta-sandwich domain of Sec23/24 8 518 - -
Vivi3g03426 763 Gene3D - 10 502 - -
Vivi3g03426 763 Gene3D von Willebrand factor, type A domain 124 399 IPR036465 -
Vivi3g03426 763 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Vivi3g03426 763 CDD Sec23_C 611 731 IPR037550 GO:0030127|GO:0090114
Vivi3g03426 763 SUPERFAMILY Zn-finger domain of Sec23/24 47 119 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03426 Vivi-Chr3 57460699 57466988 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03426 K14006 - gmx:100813940 1400.96