Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03419 ATGTATTCAGATTTTCATGGTAAATATCAAGATTGGGCCACCACAGATCCCTTAGATCTTTTTCAAGCTCAGATTATAAAGACTGAATCAAATCCAAAGGCACATATTTGTAAACATTTAAAACAAGAAGCTCGTGGTTGTCATTATTTGGTATTGTGGTTGGATTGTGATCGTGAAGGAGAGAATATATGTTTTGAGGTTATAGAATCAACCGGTTTCAAAATAAATGATGTCTATCGCGCACGGTTTTCTTCTGTTACTGAGAAAGATGTTCTGAATGCTCTAGCCAACCTTGTCAGACCGAACAGGGATGAAGCAATGGCTGTAGATGCCAGACAAGAGATAGATTTGAAAGTTGGAGTTGCCTTTACTCGATTTCAAACGAGTTTTTTCCAGGGGAAATATGGGAACCTAGATGCCAGAGTCATCTCCTATGGACCCTGTCAAACTCCAACATTAGGATTTTGTGTGCAGCGGTATTTGCAAATAAATACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAGTGGCTATGAAATTCTGCTAGAATGGCAACGCAGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTGCTGAAGATGGGATTCTGGAAGTGACTGATATATCAGAAAAACAGGAAACCAAAGGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGTCCTCAGACAGCTATGCAACTAGCTGAACGATTGTATACTCAAGGCTTCATCAGTTATCCACGAACAGAAAGCACGGCATACCCTCCGTCATTTGACTTTCGTGGTGCACTCTCTGCACAAAGAAATAATCCAACTTGGGGAAACTATGTAGAAGGGCTACTCACCAGTGGTTATCAGAAACCTCGATCGGGAACAGATGTGGGTGACCATCCTCCCATTACTCCAATGAGATCTGCATCAGAGGATATGCTAGGAAATGATGCTTGGAAGCTGTACCAATATATCTGTCAATACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATGTAAGGAAAAAGGTTGAGTTTTCAGTAGGTGGAGAGTCTTTTCATTGTACAGGGCAGCATGTTATCACCAAAGGATTTACAGCTATTATGCCTTGGTTGGCGATAAATGATAAAAGTATTCCATCATTTATAAAAGGGCAGAAAATAAAAGTATCAAAAGTTGAGCTCTATGAAGGGAATACCACTCCTCCAGATTTTCTTACCGAGAGTGAGCTGATCTCTCTAATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACATATTAACAATATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGGAAGCTCGTCCCAACCACATTAGGTATAACTTTAGTAAGAGGTTATCAATCAATTGATCCAGACCTCTGCCTGCCCGATATTCGTAGCTTTATTGAGCAACAAATTACTCTTATTGCTAAGGGCCAGGTAGATCATCATCGTGTGGTGCAGCATGTAATTGAACAGTTCAAGCAAAAATTTTGTTACTTTGTGAAGAAGATTGAGGCCATGGATGCACTATTTGAAGCACAGTTTTCTGCACTTGTTGATTCAGGGCGTATTATGAGTAAATGTGGTAAATGCTTGCGATATATGAAGTATATTTCTGCCCAGCCACCACGTTTGTATTGTGGCACATGTGAGGAAGTTTATTATCTTCCACAGAAGGGCACAATAAAGCTGTACAAGGAACTGTCTTGTCCTTTAGACAATTTTGAGCTTTTGATCTGCTCCGTGGCTGGCCCAGAGGGTAAATCATTCCCGCTATGTCCTTACTGCTACAGCAATCCCCCATTTGAAGGTATCGAAGCACTCATCAATACGTCTAAAACTAGTACTTCTGGCAAGATTGGCAAGGGAGCTGGCATGCCATGCAACCTATGCCCCCATCCCACTTGCCCAAATTCTTTAGTTACCCAAGGTGTATGTGCTTGCCCAGAATGTAGTGGGACACTTGTCTTAGACCCTATAAGTGCTCCCAAATGGCGACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCAGAGGGTGCTCATAGAATCTCGACAACTAAAGAAAAGTGCCTTGAATGTGACTCTTCAATCATAGAAGTGGACTTCAACAAGAAAACAACTCCTCTGGCAGACGGGGCTACGTTGCACCGGGGTTGCATTCTTTGTGATGTATTACTACACTCCCTTGTGGAGATGAAATATGGGAGAGGCTTCAAGCGTATGAGTTCACGTGGAAGAGGAAGAGGAAGGGGAGGAAGAGGAAGAGGACGGGGTGGTAAAATGATGGATCCGAAAATGAGTTTTCGAGATTTCTAG 2397 0.4184 MYSDFHGKYQDWATTDPLDLFQAQIIKTESNPKAHICKHLKQEARGCHYLVLWLDCDREGENICFEVIESTGFKINDVYRARFSSVTEKDVLNALANLVRPNRDEAMAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQSGYEILLEWQRSKLFDINVAMMFQKLVAEDGILEVTDISEKQETKGRPVGLNTVNLLKVASSALGFGPQTAMQLAERLYTQGFISYPRTESTAYPPSFDFRGALSAQRNNPTWGNYVEGLLTSGYQKPRSGTDVGDHPPITPMRSASEDMLGNDAWKLYQYICQYFIGTVSPDCKYVRKKVEFSVGGESFHCTGQHVITKGFTAIMPWLAINDKSIPSFIKGQKIKVSKVELYEGNTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFCYFVKKIEAMDALFEAQFSALVDSGRIMSKCGKCLRYMKYISAQPPRLYCGTCEEVYYLPQKGTIKLYKELSCPLDNFELLICSVAGPEGKSFPLCPYCYSNPPFEGIEALINTSKTSTSGKIGKGAGMPCNLCPHPTCPNSLVTQGVCACPECSGTLVLDPISAPKWRLCCNMCNCLVFLAEGAHRISTTKEKCLECDSSIIEVDFNKKTTPLADGATLHRGCILCDVLLHSLVEMKYGRGFKRMSSRGRGRGRGGRGRGRGGKMMDPKMSFRDF 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03419 798 MobiDBLite consensus disorder prediction 767 782 - -
Vivi3g03419 798 Gene3D - 1 101 - -
Vivi3g03419 798 MobiDBLite consensus disorder prediction 783 798 - -
Vivi3g03419 798 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 562 IPR023405 -
Vivi3g03419 798 Gene3D Topoisomerase I, domain 3 167 420 IPR013825 -
Vivi3g03419 798 SMART topIban2 77 173 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 MobiDBLite consensus disorder prediction 767 798 - -
Vivi3g03419 798 ProSiteProfiles Toprim domain profile. 1 88 IPR006171 -
Vivi3g03419 798 CDD TOP1Ac 104 522 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 CDD TOPRIM_TopoIA 4 98 - -
Vivi3g03419 798 PRINTS Prokaryotic DNA topoisomerase I signature 261 270 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 PRINTS Prokaryotic DNA topoisomerase I signature 436 450 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 PRINTS Prokaryotic DNA topoisomerase I signature 338 354 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 PRINTS Prokaryotic DNA topoisomerase I signature 50 63 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 PRINTS Prokaryotic DNA topoisomerase I signature 143 161 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 Pfam DNA topoisomerase 101 512 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vivi3g03419 798 Gene3D Topoisomerase I, domain 2 108 522 IPR013824 -
Vivi3g03419 798 FunFam DNA topoisomerase 227 352 - -
Vivi3g03419 798 Pfam Toprim domain 23 85 IPR006171 -
Vivi3g03419 798 Gene3D Topoisomerase I, domain 4 227 352 IPR013826 -
Vivi3g03419 798 PANTHER PROKARYOTIC DNA TOPOISOMERASE 3 701 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vivi3g03419 798 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 256 270 IPR023406 GO:0003917
Vivi3g03419 798 SMART topIaneu2 219 474 IPR003602 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03419 Vivi-Chr3 57343752 57354481 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03419 K03165 - gmx:100791807 1474.14