Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03396 ATGGAAGGCCTGGCCATGCTGAAGCAGCTTATCGGTCAGCTTCAGCACCTCCTCGACTCTCAATCTCATCATTCTCCTTCTCCTTCTTCTTCTTCTTTTCTTCTTCAACAACCTTCTCATCACACTATCCTCCTTCAACAACACCCCAGATGGACTGCGTTTGACATCGAAAATAGCTCTGTAGATGATTGTTTTGGGATTGAAATGGCAGCTGGAAAGTCTCACAGTTTCAGGATGTCGGAGCCTCTAAAGCCTCCACCTGCTAAGAAGCCTCGCAGAGATCGAAGCAGGGGAAAATCGTCAGGAAGATCCTGTACAAGTGAAGTTATGGAACAAGAAATCTGGAAAGATTTTCCTGAAGATTTATTTGAGGCGGTAATTGCACGGCTTCCTATTGCCACTTTTTTCCGCTTCCGTTCTGTATGCCGTCAATGGAGTTCTTTGCTGGCTTCTCAAAGCTTTTCTCAGCATTGTGCCCAAGTCCCACAAGAAAATCCATGGTTTTACACCATAACCCACGAAAATGTGAATTCAGGAGCCATGTATGACGCTTCTTTGAAAAAGTGGCATCATCCTTCTATATCAGCAATGCCCACAAAGTTGATTGTTTTGCCAGTGGCTTCTGCAGGGGGGTTAGTTTGCTTTTTGGACATTGGCCATCGAAACTTCTATGTATGTAACCCGCTGACTCAATCCTTCAAGGAGTTACCAGCTCGGTCAGTGAGGGTCTGGTCTCGCGTTGCTGTAGGGATGATAGCAAATGGAAATTCTGCTGGTTCAGGCTACAAGATCCTATGGGTTGGTTGTGATGGAGAACATGAAGTTTATGACTCGATGAAAAACTCTTGGAGCCGCCCAGGAAACATGCCTGGAAGTGTGAAGCTGCCACTGTCCCTTAACTTTAGGTCACAAGCTGTCTCTATTGACAGTACACTTTACTTCATGCGTTCAGATCCAGAAGGGGTTATTTCTTATGATATGGCTACGGGAGTTTGGAAACAATACATAATCCCAGTGCCATTGCATCTGACTGACCATACTCTGGCTGAGTTTGATGGCCAGATCATGCTTGCAGGATTGCTCACAAAGAATGCAGCCACATGTGTTTGCATATGGGAGCTGCAGAAAATGACGCTCTTGTGGAAGGAGGTAGACAGAATGCCAAATATATGGTGCTTGGACTTTTATGGTAAGCACGTTAGAATGACTTGCCTGGGTAACAAAGGCTTGCTCATGTTGTCCCTGAGATCTAAACAAATGAATCGGTTGGTTACTTACAACATAGCAAAGAAGGAATGGCTGAAGGTTCCCGGGTGTGTGGTGCCGCACGGGAGGAAACGGCAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCCGTGGCTTGA 1395 0.4602 MEGLAMLKQLIGQLQHLLDSQSHHSPSPSSSSFLLQQPSHHTILLQQHPRWTAFDIENSSVDDCFGIEMAAGKSHSFRMSEPLKPPPAKKPRRDRSRGKSSGRSCTSEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWSSLLASQSFSQHCAQVPQENPWFYTITHENVNSGAMYDASLKKWHHPSISAMPTKLIVLPVASAGGLVCFLDIGHRNFYVCNPLTQSFKELPARSVRVWSRVAVGMIANGNSAGSGYKILWVGCDGEHEVYDSMKNSWSRPGNMPGSVKLPLSLNFRSQAVSIDSTLYFMRSDPEGVISYDMATGVWKQYIIPVPLHLTDHTLAEFDGQIMLAGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPHGRKRQWIACGTAFHPCLTAVA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03396 464 Gene3D - 115 154 - -
Vivi3g03396 464 Gene3D - 168 450 IPR015915 GO:0005515
Vivi3g03396 464 ProSiteProfiles F-box domain profile. 112 157 IPR001810 GO:0005515
Vivi3g03396 464 FunFam F-box only protein 6 115 154 - -
Vivi3g03396 464 SUPERFAMILY F-box domain 110 184 IPR036047 GO:0005515
Vivi3g03396 464 SMART fbox_2 118 158 IPR001810 GO:0005515
Vivi3g03396 464 FunFam F-box only protein 6 165 451 - -
Vivi3g03396 464 PANTHER BNACNNG10540D PROTEIN 91 457 - -
Vivi3g03396 464 SUPERFAMILY Galactose oxidase, central domain 179 444 IPR011043 -
Vivi3g03396 464 CDD F-box_AtFBW1-like 117 154 - -
Vivi3g03396 464 Pfam F-box domain 115 153 IPR001810 GO:0005515
Vivi3g03396 464 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03396 Vivi-Chr3 57049019 57054082 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03396 - - gmx:100810179 781.171