Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03388 ATGTCTCAGGTTGATAACAGAAATTCCTCAGCTGCAAAGCGTGCCAGGACTGATGGTAGCCGTAGGGAAGATGACTGGACATGTCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCAAGGCCTGCCGATCATAATTTGAAATCTGCTGTGAAGCCTCTTCAAGCTCCACCGGCCTATTCAGCTGCACCTCCTTATATAGGCTCCAATGCCCCCCCTTCAATATATCTTGGGGTCCCACCATACGGGTCTTCTTTATTCAATGGATCACCAGTTCCTCCCTACGAGGTTCCATTTTCTGGAGGATCAGCGGCCTATCACTACAATTATGGAGGCCGCCTTTCTGCTGGCAGTCCGTATAGACCACTGCATCTAGCAGGACCACCACCATACGCAAGTGGATCCATGGTGGGAAACGGTGGGATCTATGCCATGCCTCAGTTATTGGATCGCTATGGCCTTGGTGTCCCTATTGGACCTGGAGCAATGGGCACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAAGGAGGAGATGCTACTCGTGACAATGATTGGGCATGTCCAAAATGTGGCAATGTCAATTTCTCATTTAGAACTGTCTGCAACATGAGAAAGTGCAACACTCCCAAGCCTGGATCCCAGGCCTCAAAGCCTGACAAGAACTCTAAGCAAAAGATGCCCGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCATTCCGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCGGATAAATCTCCCTCATCATCTCCAGAACAAAATGACCAGGCAGAGAACCATTGCGAAGAAATGAAGAACTCAGAAGCGTGTTCTGAAGAAGCCGCTTGTTGCACTTCGGTCTTGAAGGAAGCATCATCTTTAGCCGCTTGTTGCACTTCGGTCTTGAAGGACGACACATCTTTAAAGAGACCGAGAGAAATGGATGGAAATTTTAAAAGGTCCTCATTGATCTCACCACTCGCCAGCATTTGTATTAAAATAGTTTAA 1077 0.4726 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNLKSAVKPLQAPPAYSAAPPYIGSNAPPSIYLGVPPYGSSLFNGSPVPPYEVPFSGGSAAYHYNYGGRLSAGSPYRPLHLAGPPPYASGSMVGNGGIYAMPQLLDRYGLGVPIGPGAMGTRPGFFRDDKSQKKGGDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKPDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESDKSPSSSPEQNDQAENHCEEMKNSEACSEEAACCTSVLKEASSLAACCTSVLKDDTSLKRPREMDGNFKRSSLISPLASICIKIV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03388 358 Gene3D - 191 226 - -
Vivi3g03388 358 Gene3D - 231 272 - -
Vivi3g03388 358 Gene3D - 14 54 - -
Vivi3g03388 358 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 114 230 - -
Vivi3g03388 358 SUPERFAMILY Ran binding protein zinc finger-like 187 226 IPR036443 -
Vivi3g03388 358 SMART zf_4 242 268 IPR001876 -
Vivi3g03388 358 SMART zf_4 24 50 IPR001876 -
Vivi3g03388 358 SMART zf_4 196 222 IPR001876 -
Vivi3g03388 358 MobiDBLite consensus disorder prediction 221 242 - -
Vivi3g03388 358 MobiDBLite consensus disorder prediction 173 194 - -
Vivi3g03388 358 MobiDBLite consensus disorder prediction 269 288 - -
Vivi3g03388 358 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Vivi3g03388 358 MobiDBLite consensus disorder prediction 11 25 - -
Vivi3g03388 358 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Vivi3g03388 358 MobiDBLite consensus disorder prediction 180 194 - -
Vivi3g03388 358 Pfam Zn-finger in Ran binding protein and others 240 270 IPR001876 -
Vivi3g03388 358 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Vivi3g03388 358 Pfam Zn-finger in Ran binding protein and others 195 224 IPR001876 -
Vivi3g03388 358 SUPERFAMILY Ran binding protein zinc finger-like 234 271 IPR036443 -
Vivi3g03388 358 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03388 Vivi-Chr3 56987368 56992320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03388 181 273 EF-hand Containing Proteins AT1G55040 32.258 4.28e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03388 - - tpra:123907979 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03388 3 56987368 56992320 Vivi3g03388 3 56987368 56992320 ECH