Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03296 ATGGCAATGATGCCATACTACCTTTCTAGGCTACCTTATCATGATTCCCTTCAAATACTTGAGGCTGATATACAACAAGCTAATTCTTTGGCTGCTGCAATTCCAAGAGCAAAGGGAGGAAATCTTATTAAAATGAAATTGGTTTGTAATCAATTGGCTCCTCTTGTTTTGTTGTTTCTTCAATGGATGGATTGGTCTTGTGCTGGCTTTTTGCATAGTTATCTTAACCTCTTTCACATACTTATATACAAAGAACCAAATGATGGGAGATCAATCTTGTCTAGCCGTGGAAGGAAAGCAACCATTAAGGATTTTTATGCTGTTATACTGCCGTCTCTTCAGCGGCTTCACGGTAGCTTCGACGACAAGTTGGAGACTTGTGAAGAAGTGAACACGAGCTTAAAAGGTTCGGTTTGTGGCAAGAAGGTGATTGAAGGAGATGAGAAACTAACCAATGTTGATTTACAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGTACCAAAATGGTTTTGCCTAATTGCTGTCACGCCATGTGCATCAAATGCTACCGCAAATGGAACAGGAAGTCAAAGTCGTGTCCTTTTTGTCGCGGTAGCTTGAGGAGGGTTAATTCAGAGGATCTATGGGTATTAACTTGCGATGAAGATGTTGTTGACGCTGAAACAGTTTCTAAAGAAGACTTATTGCGGTTTTACCTCTATATCAACAAGCTTCCCAAAGATAACCCGGACGCACTTTTCCTAATGTATTATGAATACCTGATTTGA 774 0.4005 MAMMPYYLSRLPYHDSLQILEADIQQANSLAAAIPRAKGGNLIKMKLVCNQLAPLVLLFLQWMDWSCAGFLHSYLNLFHILIYKEPNDGRSILSSRGRKATIKDFYAVILPSLQRLHGSFDDKLETCEEVNTSLKGSVCGKKVIEGDEKLTNVDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNRKSKSCPFCRGSLRRVNSEDLWVLTCDEDVVDAETVSKEDLLRFYLYINKLPKDNPDALFLMYYEYLI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03296 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Vivi3g03296 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Vivi3g03296 257 SUPERFAMILY RING/U-box 152 203 - -
Vivi3g03296 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 210 IPR013083 -
Vivi3g03296 257 PANTHER RING FINGER PROTEIN 41, 151 12 255 - -
Vivi3g03296 257 SMART ring_2 161 198 IPR001841 -
Vivi3g03296 257 Pfam Ring finger domain 159 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03296 Vivi-Chr3 55784477 55786802 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03296 - - mtr:11441072 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03296 3 55784477 55786802 Vivi3g03296 3 55784477 55786802 ECH