Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03283 ATGGCAGCAACAATGGCAATGATGATCAACTCCAAGTGTCTAAACACAGCCATAACCAAGTTACAAAACCCAACAACCACTGCAAAACTAACAACAACAACATGCAAAACCACCACCATTCAGAACCTACCAAAGGCTCTTACCTCAATTGACCACACCAACGTTGCTGTCTCACCTTCCATTGCAATAGCAGGGGCAATATTCTCATCCCTTGCAACCTCCGACGCTGCTTTCGCTGCTCAACAGATAGCAGAAATAGCAGAAGGTGATAACAGAGGATTAGCACTGTTGTTGCCATTGATTCCAGCCATAGGGTGGGTTTTGTTCAACATATTCCAGCCAGCTTTGAACCAAATCAACCGTATGCGTAGCACGAGAGGGGTGATTGGCGGGCTTGGACTCGGGCTTGGCGGGCTTGCAGTATCAGGTATGGTGTCTGAAGCATCTGCTAGTGAGATAGGTATGATTGCTGATGCTGCTGCTGCAGGAAGTGACAACAGAGGAACACTTCTGCTGTTTGTGGTTGCACCAGCTATACTTTGGGTGCTTTACAATATTTTGCAGCCTGCTCTTAACCAGATCAATAAGATGAGATCTGAGTAA 603 0.4643 MAATMAMMINSKCLNTAITKLQNPTTTAKLTTTTCKTTTIQNLPKALTSIDHTNVAVSPSIAIAGAIFSSLATSDAAFAAQQIAEIAEGDNRGLALLLPLIPAIGWVLFNIFQPALNQINRMRSTRGVIGGLGLGLGGLAVSGMVSEASASEIGMIADAAAAGSDNRGTLLLFVVAPAILWVLYNILQPALNQINKMRSE 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03283 200 Hamap Photosystem II protein Y [psbY]. 90 124 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vivi3g03283 200 Pfam Photosystem II protein Y (PsbY) 165 197 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vivi3g03283 200 Pfam Photosystem II protein Y (PsbY) 90 122 IPR009388 GO:0009523|GO:0015979|GO:0016020|GO:0030145
Vivi3g03283 200 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 199 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03283 Vivi-Chr3 55560617 55561458 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03283 K02723 - zju:107428525 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03283 3 55560617 55561458 Vivi3g03283 3 55560617 55561458 ECH
Vivi5g05191 5 153094383 153095246 Vivi3g03283 3 55560617 55561458 PCT