Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03228 ATGGAACTTGTTTTTACCAAATGGGCATGCACATTTTTACTGTGTTTTTGTCTCGTCACTTCTAGAGTATATTCAGTGGAGGGGTTACTTGGAGATTCTAAAGTTAGAGGAGTGAACTTAGGTGGGTGGCTGGTTATTGAAGGTTGGATTAAACCCTCATTGTTTGATGGCATTGCCAATGGAGACTTGCTTGATGGGACAGAGGTGCAGTTTAAGTCAGTGACATTACAGAAATATGTATCTGCAGACGATGGGGGAGGAATGAATGTGACAGTTGATAGGGATGCTCCATCTTCATGGGAAACATTCAGGTTGTGGAGAGTATCACAATCAGAATTTCAATTCCGTACCGCACAAGGCCAATTCCTTACATGTGATGGTGGAGGCTGCACTGTCTCTGCAACAGCAAAATCGCCTTCAACATCAGAGACATTTGAAGTTCAGCGAAACGAGAAAAATAGGATTCACATCAAAATAAAGAACGGGCCCTATCTGCAGGTTACAACTGGAAATCAGCTCACAGCAAACTATCATGGGGCACCGGGATGGGATGATAATTCAGCCACATTTGAAATAACAATTGTATCAAATAACCTTCATGGAGATTATCAGCTAGCAAATGGTTATGGACATGATAGCGCAGAAGATGTTCTTAGGAGACATAGAAATAGCTTTATTACAATAGAGGATTTCAAATTTCTATATGAACATGGAATAAATACGGTGAGGATTCCGGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCAAGTCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTCATGGGCACAAGAATATGATATAAAATGCATAATTGACCTTCACGCTGCTCCTGGTTCACAAAATGGGATGGAACATAGTGCAAGCAGGGATGGATTTACAGGATGGCCAACTTCTCCTGATTACATTTCAAAGTCATTACATGTTATCGAGTTTTTAATTTCTCGATATGCGAAGCATCCTGCCTTGCTTGGAATTGAACTTTTGAATGAACCATCCGCTGGCACAGTTTCGTTAGATATTTTAGTTTCCTACTACAAGCAAGGGTATCAAATTGTTCGTAAATACTCGTCGTCGGCTTATGTGATAGTGTGCCAGCGAATTGGCAACGCAGATCCTTTGGAGCTTTATCAAGCCAACATAGGATCCACCAATTTAGTTTTGGATTTGCATTTCTACAACCTTTTTGACGCATTCTTTGTTAATATGAGTGCCCGGGATAATATACAATACATATACAAAAGTAGGGAAGATATGTTGCAGGCCTTCAACAATTCAAACGGCCCACTAGTTTTTATAGGAGAGTGGGTGAATGAGTGGAATGTGGCGAGCGGATCCCAAACAGATTATCTGGAGTTTGGAAAGGCACAGTTAGATGTGTATAATGCAGTGTCGTTTGGTTGGTGTTATTGGACTATAAAGAATGATAGGGAGCACTGGGATTTTGAATGGAACATTAGGAAAAACTATCTTCAATTTGGTAACTCCCCCAGAAAACAAAACATATACACTCTGGGATTGTTTGGATTGGCTTTCACCTGGTTTTGTCTTCAATTTTTGTGA 1599 0.404 MELVFTKWACTFLLCFCLVTSRVYSVEGLLGDSKVRGVNLGGWLVIEGWIKPSLFDGIANGDLLDGTEVQFKSVTLQKYVSADDGGGMNVTVDRDAPSSWETFRLWRVSQSEFQFRTAQGQFLTCDGGGCTVSATAKSPSTSETFEVQRNEKNRIHIKIKNGPYLQVTTGNQLTANYHGAPGWDDNSATFEITIVSNNLHGDYQLANGYGHDSAEDVLRRHRNSFITIEDFKFLYEHGINTVRIPVGWWIAFDPDPPSPFIGGSLEALDNAFSWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSPDYISKSLHVIEFLISRYAKHPALLGIELLNEPSAGTVSLDILVSYYKQGYQIVRKYSSSAYVIVCQRIGNADPLELYQANIGSTNLVLDLHFYNLFDAFFVNMSARDNIQYIYKSREDMLQAFNNSNGPLVFIGEWVNEWNVASGSQTDYLEFGKAQLDVYNAVSFGWCYWTIKNDREHWDFEWNIRKNYLQFGNSPRKQNIYTLGLFGLAFTWFCLQFL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03228 532 ProSitePatterns Glycosyl hydrolases family 5 signature. 336 345 IPR018087 GO:0004553|GO:0005975
Vivi3g03228 532 Pfam Cellulase (glycosyl hydrolase family 5) 226 488 IPR001547 GO:0004553|GO:0071704
Vivi3g03228 532 SUPERFAMILY (Trans)glycosidases 34 509 IPR017853 -
Vivi3g03228 532 Gene3D Glycosidases 176 513 - -
Vivi3g03228 532 SUPERFAMILY Actin-crosslinking proteins 69 183 IPR008999 -
Vivi3g03228 532 PANTHER FASCIN 32 504 IPR010431 GO:0007015|GO:0051015
Vivi3g03228 532 Gene3D - 49 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03228 Vivi-Chr3 54766484 54771254 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03228 - - tpra:123911124 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03228 3 54766484 54771254 Vivi3g03228 3 54766484 54771254 ECH