Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03203 ATGACATCTTCAGTAATTGAAAATGGACACGATGAGGCCAAACACGAACCATCCGATTTGATCGCGGAGAAAATGAATCCTACGGTTGTGAATCTTTTGCTTCCGAATGAAACGTTCTTGAAAGCTGCGATTTCTCTGAAAGACGAGGTGGTGGAGGTGAATTGGAATCGGCGGGAAGTGGTTGATCCGACGGTGTATACCGGTTTGCTTGGTACGGCTTTTACTTGCCTGAGGTCGTTTGAGGTTACCGGTTGCCGTGAAGATTTATTGCTATGCTCGGAGATTATTGACACGTGTGTCACTGTCGCACGTGCCTCCCTCAGACACGTGACATTTTTGTGTGGTAGAGGAGGAGTATATGCCCTTGGAGCTGTCGTTGCTAATTACATGGGGGACCTTCCAAAACGTGACCTGTTTGTGGGTCTATTCATTGAGGTGGCAAAAGAAAGAGCTCTGCCTGTTGGACCAGAGGAAGGCGGATTTGGAATGTCATATGATCTTCTCTACGGACGAGCTGGATTCTTATGGGCTGCATTATTTGTAAACAAGCATCTAGGAGAAGATGTGGTGCCCAAAGATATTCTAACGGCTATTATTGATGCAGTATTGGCTGGCGGTAGAGCCGGAGCGTCTGATATCAAAGACTGTCCATTAATGTATAGGTGGCATGGGACTAGATACTTAGGTGCAGCAAATGGTCTTGCTGGTATTCTTCATGTGCTCCTTCATTTTCCACTTCCAAGTGAAGATGCTGAGGATGTTAAGGGAACTTTGAGATACTTGATAAGTAAACGTTTTCCTCATAGTGGAAATTATCCATCAAGTGAAGGGAATCCAAGAGATAAGTTAGTGCAGTGGAGTCATGGTGCAACTGGGATGGCCATTACACTGTCTAAAGCAGCACAGGTTTTTCCAAATGATAGAGAACTACGAGATGCAGCAATAGAAGCAGGAGAAGTTGTGTGGAAAAGTGGATTAGTGAAGAAATTGGGACTGGCTGATGGCGTATCTGGAAATGCCTATGCCTTTCTTTCACTCTACAAACTAACTAAAGATAGTATATATGAAGAGAGGGCAAAATCATTCTCTTGTTTTTTGTATGATAATGCTAGAGCTTTAGCAGCTGAGGGGCAAGCTCTTACTGGTGGCAATGACTACTCTCTCTTCCATGGACTTGCTGGGACAGCATGTCTTTGGTTTGATTTGATTGCACCTGATAACTCTAGGTTTCCTGGATATGAATTATAG 1248 0.4415 MTSSVIENGHDEAKHEPSDLIAEKMNPTVVNLLLPNETFLKAAISLKDEVVEVNWNRREVVDPTVYTGLLGTAFTCLRSFEVTGCREDLLLCSEIIDTCVTVARASLRHVTFLCGRGGVYALGAVVANYMGDLPKRDLFVGLFIEVAKERALPVGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGEDVVPKDILTAIIDAVLAGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLISKRFPHSGNYPSSEGNPRDKLVQWSHGATGMAITLSKAAQVFPNDRELRDAAIEAGEVVWKSGLVKKLGLADGVSGNAYAFLSLYKLTKDSIYEERAKSFSCFLYDNARALAAEGQALTGGNDYSLFHGLAGTACLWFDLIAPDNSRFPGYEL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03203 415 SUPERFAMILY LanC-like 41 415 - -
Vivi3g03203 415 PRINTS LanC-like protein superfamily signature 283 303 IPR007822 GO:0031179
Vivi3g03203 415 PRINTS LanC-like protein superfamily signature 385 402 IPR007822 GO:0031179
Vivi3g03203 415 PRINTS LanC-like protein superfamily signature 165 180 IPR007822 GO:0031179
Vivi3g03203 415 PRINTS LanC-like protein superfamily signature 62 80 IPR007822 GO:0031179
Vivi3g03203 415 PRINTS LanC-like protein superfamily signature 227 243 IPR007822 GO:0031179
Vivi3g03203 415 PRINTS LanC-like protein superfamily signature 330 343 IPR007822 GO:0031179
Vivi3g03203 415 SMART LANC_like_2 59 415 IPR007822 GO:0031179
Vivi3g03203 415 CDD euk_LANCL 65 411 - -
Vivi3g03203 415 PRINTS Eukaryotic LanC-like protein family signature 401 415 IPR020464 -
Vivi3g03203 415 PRINTS Eukaryotic LanC-like protein family signature 195 210 IPR020464 -
Vivi3g03203 415 PRINTS Eukaryotic LanC-like protein family signature 263 278 IPR020464 -
Vivi3g03203 415 PRINTS Eukaryotic LanC-like protein family signature 301 322 IPR020464 -
Vivi3g03203 415 Pfam Lanthionine synthetase C-like protein 60 415 IPR007822 GO:0031179
Vivi3g03203 415 Gene3D - 8 415 IPR012341 GO:0005975
Vivi3g03203 415 PANTHER LANC-LIKE PROTEIN 36 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03203 Vivi-Chr3 54395883 54398386 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03203 - - gmx:100785406 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03203 3 54395883 54398386 Vivi3g03203 3 54395883 54398386 ECH