Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03166 ATGGGTGGTTCTGGTTCCAAACTTGAGAAGGCTCTCGGTGATAATTTTCCTGAAGGAGAACATTACTTCGGCCTTGAGAATTTTGGCAATACCTGTTATTGCAACAGCGTTTTGCAGGCTCTATACTTTTGTGTTCCATTTCGAGAACAATTGCTACAGTATTATGGAAAAAACAAAAACATGCCGGATGCAGAGGAAAATCTTTTGACTTGCCTAGCTGACTTATTTTCGCAGATAAGTTCCCAGAAGAGGAAAACAGGTGTAATTGCTCCCAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGACGCCCATGAATTCTTAAACTATTTGTTAAATGAACTTGTTGACATTCTGGAAAAAGAGGCCCAGATTGCAAAAGACAATCGAGAGACATTACTACCTTCAGAGAAGATTGCGAATGGACCAAAAAATGGTTTATCTAATGGTGCTAAAAAAGAGCCGCCTTTAGCTACTTGGGTGCACAAAAATTTCCAGGGAATACTTACCAATGAGACAAGGTGCTTGCAATGTGAAACAGTAACGGCTAGGGATGAAACATTTTTCGACTTGAGTCTTGATATTGAACAAAACAGTTCCATTACAAGTTGCTTGAAAAATTTCAGTTCAACGGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAAAAGAGGATGAAGATAAAGAGACCGCCTCGTGTTTTAGTCATTCATCTTAAGCGGTTTAAGTACATGGAACAACTGGGCCGCTACAAGAAACTGTCTTACCGTGTGGTTTTTCCCCTTGAGCTCAGGTTGAGTGATACAGATGAAGAAGCAGATATTGAGTATTCTCTATTTGCTGTAGTTGTCCATGTTGGGAGTGGGCCTAATCATGGGCATTATGTTTGCCTTGTAAAAAACCATAACCACTGGTTATGTTTTGACGACGAAACTGTTGAGGCGGTTGATGAAGCTGCTGTTCAAACATTCTTTGGGTCAACTCAAGAATTCAACAATAATACAGACCATGGTTATATTTTGTTCTACGAGAGCGTTAACAGAAACTAA 1104 0.3967 MGGSGSKLEKALGDNFPEGEHYFGLENFGNTCYCNSVLQALYFCVPFREQLLQYYGKNKNMPDAEENLLTCLADLFSQISSQKRKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVDILEKEAQIAKDNRETLLPSEKIANGPKNGLSNGAKKEPPLATWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPRVLVIHLKRFKYMEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEAVDEAAVQTFFGSTQEFNNNTDHGYILFYESVNRN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03166 367 Pfam Ubiquitin carboxyl-terminal hydrolase 23 361 IPR001394 GO:0004843|GO:0016579
Vivi3g03166 367 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 363 - -
Vivi3g03166 367 CDD Peptidase_C19G 24 362 - -
Vivi3g03166 367 SUPERFAMILY Cysteine proteinases 21 364 IPR038765 -
Vivi3g03166 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 295 313 IPR018200 GO:0004843|GO:0006511
Vivi3g03166 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Vivi3g03166 367 Gene3D Cysteine proteinases 6 363 - -
Vivi3g03166 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 364 - -
Vivi3g03166 367 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 364 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03166 Vivi-Chr3 53865843 53870914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03166 24 335 Miscellaneous Gene Families AT4G31670 27.864 2.95e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03166 K11842 - gmx:100305765 667.537