Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03149 ATGCCATCCCTTCAGCTGTTGAAATTAACTCGGCATGGCCAGAGTTTTCTGGCTTCGAAGAGGAAAGCTTTACTACTTGCATCTGGTATCTTAGTTGCTGGTGGAACAGCTGCATATATGCAATCAAGGTTTAGAGTTAATAAACGTGATTTATTTGGTCGTTGCAATGAGCACGGCAATAATAAAGAAGTAACAAAGGAAGAGGTTATGAATGACTCAACTGCACCAAAAAATAAACAAAAGAAAGGAGGCTTGAAGTCACTTCAAGTCCTTACTGCAATTCTTCTATCTGAGATGGGTCAATTAGGTGTGAAGAATCTTTTATCTTTAGTTGCCACAGTGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGGCGTGCACCATTGTTTTTTCGGTTAATTTCAGAAAATATTATTCTGTGCTTCCTCTTGTCAACCATTCATTCTACATCAAAGTATATAACAGGGACTTTGAGTCTTCATTTCAGAAAATTACTGACAAAGCTTATTCATTCCCACTATTTTGAGAACATGGTATATTACAAAATATCACACGTTGATGGTCGTATAGCAAACCCAGAGCAAAGAATTGCTAGTGATGTGCCGAAGTTCTGTTCAGAGTTGAGTGAAATTGTCCAAGATGATCTAACAGCAGTGGCTGATGGACTTCTATATACTTGGCGGCTTTGTTCGTATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTACTTGGAGCCGGGGCTGCAATCAGAAACTTCTCTCCTTCGTTTGGGAAACTTATGTCCACAGAACAGCAACTGGAGGGAGAGTACCGACAGCTGCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTATGGTGGAGAGAAGAGAGAAGAAGCTCATATTCAACAAAAATTTAAGACTTTGGTTGGGCACATGAGTAGAGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTTTTGTTGAAATACCTTGGTGCAACTTTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATCTAAGGCCCGACAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCACACCAGTGTCATAGTTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTTAGTGGGTATGCTGATCGCATTTATGAGTTACTGGCTGTATCAAGGGAGCTAAGCTTGGTAGATGAGAAATCATCCCTGCAAAGAAAAGGAAGTAAAAATTGCATAAGCGAAGCTAACTACATTGAGTTTTCTAATGTCAAGGTTGTGACCCCTACTGGTAATGTCTTGGTGGATGATTTGACTCTCAAGGTTGAGCCAGGATCTAATCTTTTGATCACAGGTCCAAATGGAAGTGGAAAGAGCTCGCTTTTCCGGGTTTTAGGCGGTCTTTGGCCTTTGATATCTGGACATATTGTGAAACCCGGCATTGGCTCTGATCTTAATAAAGAAATTTTCTATGTACCTCAAAGGCCATACACTGCTGTGGGAACACTTCGTGATCAGTTGATTTATCCTCTTACTGCCCATCAAGAGGTTGAACCACTCACAGATTATGGGATGGTGGAGCTTTTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCGTCTGAAAAAGAGGTAAATTGGGGCGATGAACTTTCGTTGGGTGAGCAACAGAGATTGGGCATGGCTAGACTTTTCTACCACAAACCTAAATTTGCTATTCTTGATGAGTGCACAAGTGCTGTCACTACTGACATGGAAGAGCGGTTTTGTGCTAAAGTTCGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCGTTGGTTGCATTTCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAGAAGGGAGGACTCTTCTACCGAAATGGGGATTGATACAATGAAGACATCAGAAACAAATAGGAAGAATGATGCAAAAGCAGTTCAACGAGCATTTGCCATGAGTAAAACGGACTCTACATTCTCAAGTTCAAAGGCAGAGTCGTATATTTCAGATGTTATATGTTCATCCCCATCTACGAATCATACTATTTTGCCATATACTGTTCCCCAACTTCATGGTAATACCAGGATATTTCCATTGAGAGTAGCTGCCATGTGCAAAGTATTGGTACCCACTGTATTTGATAAACAAGGTGCACAATTGCTTGCTGTTGCTCTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCTCTTAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGTTGCCTTTATTCGGTTAATTGGTCTGAGTGTACTTCAAAGTGCTGCATCTTCTTTCATTGCACCTTCTATAAGGCATTTGACAGCAAGGCTGGCCCTTGGGTGGCGAATTCGTTTGACACAACATCTACTACAGAACTATTTGAGAAGCAATGTCTTCTACAAGGTCTTCCACATGGCAAGCAAAAGTGTTGACGCAGATCAGAGGATAACTCAAGATTTGGAGAAGTTAACCACAGACTTGTCTGGACTGGTAACTGGACTTGTAAAGCCATCCGTAGATATTTTGTGGTTCACATGGAGAATGAAGATGTTAACTGGTCAAAGGGGAGTTGCCATACTCTATGTTTACATGTTACTTGGCCTTGGATTTTTAAGAACTGTTACTCCAGATTTTGGTGATTTGATAAGCCAAGAGCAACAACTTGAAGGACTCTTTAGGTTCATGCATGAGAGACTTTGTACTCATGCTGAATCCGTTGCTTTCTTTGGAGGCGGTGCTAGAGAAAAATCCATGGTTGAATCAAGATTCAAGGACCTTCTGGCACACTCCCAGTACCTTCTGAAAAAGAAATGGCTGTTTGGTATACTAGATGATTTCATCACAAAGCAACTACCTCATAATGTGACCTGGTTGCTGAGCTTGTTCTATGCTATGGAACACAAAGGAGACCGTGCATCGATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCAGTTGTTTCTCAAAGCTTTTTAGCTTTTGGAGACATTCTTGAATTGAATAGGAAGCTTGTAGAACTTTCTGGGGGTATTAATAGGATTTTTGAGCTTGAAGAGCTTCTGGATGCAGCACATTCTGGGGAATCCATTAATGGTGGTGCTATATCTTCAGCGAGGGATTATCATTCTAAAGATGTTATTTCTTTTTCTAAGGTTAATATTATTACTCCTTCTGAGAAGATGTTGGCCAGGGAGTTGACATGTGATGTTGAGCTTGGGGGAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTTCGAGGACTTTGGCCAATTGCAAGTGGAAGACTGTCTAGACCATTGGAAGGTATGGACCAAGATGCTGGATCAAGTTGTGGCATCTTCTATGTTCCTCAACGGCCGTACACATGCTTGGGAACACTGAGGGACCAGATTATATACCCTCTATCCCGCGATGAAGCAGAGTTTAGAGCATTGAAGATGTTTGGAAAAGGTGAAAAACATCCTGATACTATAAAGTTGTTGGACAAGCACTTGGAAGTTATCCTGGAGGATGTTCGGTTGAATTATCTTTTAGAAAGGGACACAAATGGCTGGGATGCAAATTTAAATTGGGAAGATACTCTCTCTCTTGGAGAACAACAGAGATTAGGCATGGCACGCTTGTTCTTCCATAAGCCCAAGTTTGGCATCTTGGACGAGTGTACCAATGCAACAAGTGTTGACGTTGAAGAACACCTATATGGGCTAGCGAAGAAAATGGATATCACAGTTATTACTTCCTCACAACGTCCTGCTTTAATACCATTTCATTCCATGGAATTGCGGCTGATTGATGGCGAGGGTAATTGGCAACTCCGTTTGATCAAGCAATGA 4014 0.415 MPSLQLLKLTRHGQSFLASKRKALLLASGILVAGGTAAYMQSRFRVNKRDLFGRCNEHGNNKEVTKEEVMNDSTAPKNKQKKGGLKSLQVLTAILLSEMGQLGVKNLLSLVATVVLRTALSNRLAKVQGFLFRAAFLRRAPLFFRLISENIILCFLLSTIHSTSKYITGTLSLHFRKLLTKLIHSHYFENMVYYKISHVDGRIANPEQRIASDVPKFCSELSEIVQDDLTAVADGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSTEQQLEGEYRQLHSRLRTHSESIAFYGGEKREEAHIQQKFKTLVGHMSRVLHDHWWFGMIQDFLLKYLGATFAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIVSLFQSLGTLSISARRLNRLSGYADRIYELLAVSRELSLVDEKSSLQRKGSKNCISEANYIEFSNVKVVTPTGNVLVDDLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTAHQEVEPLTDYGMVELLKNVDLEYLLDRYPSEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREDSSTEMGIDTMKTSETNRKNDAKAVQRAFAMSKTDSTFSSSKAESYISDVICSSPSTNHTILPYTVPQLHGNTRIFPLRVAAMCKVLVPTVFDKQGAQLLAVALLVVSRTWVSDRIASLNGTTVKFVLEQDKVAFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLQNYLRSNVFYKVFHMASKSVDADQRITQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKMLTGQRGVAILYVYMLLGLGFLRTVTPDFGDLISQEQQLEGLFRFMHERLCTHAESVAFFGGGAREKSMVESRFKDLLAHSQYLLKKKWLFGILDDFITKQLPHNVTWLLSLFYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELNRKLVELSGGINRIFELEELLDAAHSGESINGGAISSARDYHSKDVISFSKVNIITPSEKMLARELTCDVELGGSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPLEGMDQDAGSSCGIFYVPQRPYTCLGTLRDQIIYPLSRDEAEFRALKMFGKGEKHPDTIKLLDKHLEVILEDVRLNYLLERDTNGWDANLNWEDTLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKKMDITVITSSQRPALIPFHSMELRLIDGEGNWQLRLIKQ 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03149 1337 CDD ABCD_peroxisomal_ALDP 1099 1330 - -
Vivi3g03149 1337 Gene3D - 433 708 IPR027417 -
Vivi3g03149 1337 ProSitePatterns ABC transporters family signature. 1255 1269 IPR017871 GO:0005524|GO:0016887
Vivi3g03149 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 678 IPR003439 GO:0005524
Vivi3g03149 1337 CDD ABCD_peroxisomal_ALDP 447 655 - -
Vivi3g03149 1337 Gene3D - 1085 1326 IPR027417 -
Vivi3g03149 1337 Pfam ABC transporter 464 609 IPR003439 GO:0005524
Vivi3g03149 1337 Pfam ABC transporter transmembrane region 2 746 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g03149 1337 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g03149 1337 SUPERFAMILY ABC transporter transmembrane region 143 417 IPR036640 GO:0005524|GO:0016020
Vivi3g03149 1337 Gene3D ABC transporter type 1, transmembrane domain 95 418 IPR036640 GO:0005524|GO:0016020
Vivi3g03149 1337 SUPERFAMILY ABC transporter transmembrane region 761 1068 IPR036640 GO:0005524|GO:0016020
Vivi3g03149 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1093 1335 IPR003439 GO:0005524
Vivi3g03149 1337 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 684 1332 - -
Vivi3g03149 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1094 1326 IPR027417 -
Vivi3g03149 1337 SMART AAA_5 472 651 IPR003593 GO:0016887
Vivi3g03149 1337 SMART AAA_5 1124 1336 IPR003593 GO:0016887
Vivi3g03149 1337 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Vivi3g03149 1337 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 106 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g03149 1337 Pfam ABC transporter 1117 1283 IPR003439 GO:0005524
Vivi3g03149 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 651 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03149 Vivi-Chr3 53674078 53688070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03149 1 1337 Acyl Lipid Metabolism Gene Families AT4G39850 75.857 0.0 2093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03149 K25819 - gmx:100813765 2340.84