Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03123 ATGTCGTCAAATTCGAAATACCCGATTCTGGATGATAAGCCCATTAATCAGTGGAAGGTTACAGAGCTGAGAGAGGAGCTGAAGAAAAGGAAGTTAGCAACCAAAGGTTTAAAGGAGGATTTAATCAATCGTTTGGATGAAGCTATTCGTGAGGAAAGGGAGGTTGCCGAGGCTTCCCCTGAACAGGAGGAGGATGCTGAGGCTTCCCCCGAACAGGAAGAGGCTGCCCCTGAACAAGAGGCTGCTAAGGCTTCCCCTGAAAAGGAGGAGGCTGCAGAGGGTTTGCAGAAGGATGATGCTAATGGTTTACACACTCAAGAAGAGGGGGTAAAAGATTCTCAGACTGGTAATGTGGATGCTGAAGTGGTTGATACAACTGCAAGGGAAAGCTTCCAAACATTGGAAACTTCTGAAAAGGGGGATTCTGGTGTAGTGGAACCATTTGAAAAGGAAAATGTAGTGAAGGTTCCAGAGGTTGTGGATAATGACAGTATTAAGAATGTCAAGCAGGACGGTGTCACTGACCCAGTTGACGATAATAATACTGTTTCGGCCATGGATCTAGATAGTGAACATGCAGTTTTGCCAGCTGGCGCTGAATCTGATAATGCAGGAGAGGAGGTAGTGGCCCATCCTTCCACTATGGAGACCACTGTGGAGACTACTGTGGAAACCACTGTTACGGTCACTGAGACTGTAGAAACAGAAGTAGTAGTCAGTGGTCAGGATTCGTATAGTTCAGAGAAGAATAATGAGGATTCAGCCATCAAGCTAGAGAACGAGGAATCAAGAGCGCAGCTGGATAATGAGGAGTCAAAGCTCCAACTGGAGTGTGACCCGAAGCCTACCCGCGACGATCTCATGCCCATCTCATCTGCTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATGTCAAATTAGAACAAGATAATGTTAGGCCAGAGATGGTGGAAGAACCATCATCCAGAAATGACGTACCTGTTTATGATGAATCGCATTCAATGGATGTTGGAGGGATGCATGAAAAAAAGTCATCTGTCGAAGAAAATGACAACGATGTTCCAAGTCCAGACTTGAACAAAACCAATAGTAGTGATGATGTAGGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGACTTGCCTGAGACTAGGCAATATGATTCTAAGTTTAATGTTGATGAACTTAGGGACAAAGTTGAGAATACTGAAGTTCCTATGGTCACTGAAGAAAGCAAACCAATGGTTGAGGGAGATGGTGTATCCGCAAGAAAAAGTGATACCCATCAAGATATTGACATTAGTCCTGTTTCCTTGACTGAGAAGCGAAAATATCCTGAACAAACATTAGTAGGAAACAACGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGATGCAATTAAAGGATCAGATCTGCAAAGCACTACTCCCAGAGCCGCCATTACACCCAAGGATGGACAAACTGCTCTGAAGCGCAGCTTTTCCAGGTCTAATTCCTCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCATCACGAAGGACCCCGACTAATTCCCTCAGGATTGATCAATTCCTTCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGCAAAACTGGGAGTGTCAGCAGTTTCTGGATGGATCAAATAAAGACCCATTGCTATGTTACTTACTCGTCCACTGAAGAGGCTGTTGAGACACGAAATGCTGTGTATAACTTGCAATGGCCTCCAAATGGCGGGCGGCTCTTGGTTGCAGAGTATGTTGATCCTGAAGAGGTGAAAATGAAGTTAGAAGCTCCTCCAACACCAACTGCCTCTGTAAACAGTGTTCCAACACTTCCTCCCGCACCACCTTTATCACAGCCAGAGCCTTCCCCGCGTCAGCACAGGGAGCAGCATCTTCCAGTTGCTCTCCCACCTCCACCACCATTGTCAAGGCCCCCACCAGTTGCAAGGGAACGTCTTCCATCGCCACCACCCCTTCCTGAGAAAGTGGAACCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGGATCTATTATTTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTCGCGGCCCAAGGGAGGGAGTGTACTGGTTTTCTCCAAACCTTGTGTTTCACTTGA 2286 0.4541 MSSNSKYPILDDKPINQWKVTELREELKKRKLATKGLKEDLINRLDEAIREEREVAEASPEQEEDAEASPEQEEAAPEQEAAKASPEKEEAAEGLQKDDANGLHTQEEGVKDSQTGNVDAEVVDTTARESFQTLETSEKGDSGVVEPFEKENVVKVPEVVDNDSIKNVKQDGVTDPVDDNNTVSAMDLDSEHAVLPAGAESDNAGEEVVAHPSTMETTVETTVETTVTVTETVETEVVVSGQDSYSSEKNNEDSAIKLENEESRAQLDNEESKLQLECDPKPTRDDLMPISSAPENQVSEVNPSLGSQVKSDSFSTDSVSINEKNELKDTIIANNVKLEQDNVRPEMVEEPSSRNDVPVYDESHSMDVGGMHEKKSSVEENDNDVPSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETRQYDSKFNVDELRDKVENTEVPMVTEESKPMVEGDGVSARKSDTHQDIDISPVSLTEKRKYPEQTLVGNNEPAKRQRRWNTDAIKGSDLQSTTPRAAITPKDGQTALKRSFSRSNSSATDDTPKERIVPPSRRTPTNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSTEEAVETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEAPPTPTASVNSVPTLPPAPPLSQPEPSPRQHREQHLPVALPPPPPLSRPPPVARERLPSPPPLPEKVEPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGRECTGFLQTLCFT 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03123 761 MobiDBLite consensus disorder prediction 290 321 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 238 321 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 51 149 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 58 74 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 643 711 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 652 669 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 402 427 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 342 386 - -
Vivi3g03123 761 Gene3D SAP domain 15 61 IPR036361 -
Vivi3g03123 761 Pfam SAP domain 15 49 IPR003034 -
Vivi3g03123 761 ProSiteProfiles SAP motif profile. 15 49 IPR003034 -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 680 711 - -
Vivi3g03123 761 SMART sap_9 15 49 IPR003034 -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 107 139 - -
Vivi3g03123 761 SUPERFAMILY SAP domain 15 52 IPR036361 -
Vivi3g03123 761 SUPERFAMILY RNA-binding domain, RBD 553 641 IPR035979 GO:0003676
Vivi3g03123 761 MobiDBLite consensus disorder prediction 250 284 - -
Vivi3g03123 761 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 750 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 76 106 - -
Vivi3g03123 761 CDD RRM_ACINU 559 639 IPR034257 -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 490 558 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 199 222 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 342 427 - -
Vivi3g03123 761 MobiDBLite consensus disorder prediction 506 545 - -
Vivi3g03123 761 Coils Coil 38 58 - -
Vivi3g03123 761 Pfam RNSP1-SAP18 binding (RSB) motif 708 747 IPR032552 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03123 Vivi-Chr3 52909907 52914206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03123 K12875 - gmx:100786288 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03123 3 52909907 52914206 Vivi3g03123 3 52909907 52914206 ECH