Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03119 ATGGAGATCCATGCTGATGATTCAAAACCGGTGGTCCTCATCACGGGTTGTTCCGGTGGAGGAATAGGCCATGCCCTTGCACGCTCTTTCGCCGCCAACAACTGTATAGTGGTGGCCACCAGCAGGTCTCGTTCCACCATGGTGGACTTGGAGGACGACCCCAAGTTCTTTCTGCAAAAACTTGATATTCAGTCCGATGAGAGTGTGAACAGAGCTGTTGAAACTGTTTTGAATAAATTCGGTCGCATCGATATTCTTGTGAATAACGCCGGTGTTCCGTGTTTCGGTCCTATCGCGGATCTTCCTCTATCTGCGATCAAAAACACCTTCGAAACCAATGTTTTTGGTTCTTTGAGAATGATCCAGGCAGTGGTTCCTCACATGGCAGCAAGGAAACAGGGAAAGATTGTGAATGTTGGCAGTATTGTGGCGTTGGCCCCTAGACCTTGGTCGGGTGCTTATGCTGCTTCTAAGGCTGCTCTTCATGCTTTGACAGACACATTAAGATTGGAACTTAGTCTTTTTGGAATTGATGTTATAAATGTTGTCCCTGGACTTGTGAAATCAAATATGTTAAATTCCGGCATATCCACCTACAATAGCATGTCAGAATGGAAACTGTTCAAGCCACTTGAAGCAGGATTCAGAAAGGCACATGAACTTACTGAGAAGTCACAATCATCCACCCCTACTGATGAGTATGCTAAACACACTGTAGCTGTTATCCTTAGGAAGAAACCACCTGCATGGTTTGCTTATGGTAAATTTACTAGAATCATGGCTATCATGTACCATTTACCCCTTTGTGTTAGAGACTTTCTTTATAAGAAATCATTGAAACTCTGA 846 0.4409 MEIHADDSKPVVLITGCSGGGIGHALARSFAANNCIVVATSRSRSTMVDLEDDPKFFLQKLDIQSDESVNRAVETVLNKFGRIDILVNNAGVPCFGPIADLPLSAIKNTFETNVFGSLRMIQAVVPHMAARKQGKIVNVGSIVALAPRPWSGAYAASKAALHALTDTLRLELSLFGIDVINVVPGLVKSNMLNSGISTYNSMSEWKLFKPLEAGFRKAHELTEKSQSSTPTDEYAKHTVAVILRKKPPAWFAYGKFTRIMAIMYHLPLCVRDFLYKKSLKL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03119 281 Pfam short chain dehydrogenase 11 194 IPR002347 -
Vivi3g03119 281 Gene3D - 9 265 - -
Vivi3g03119 281 CDD 17beta-HSD-like_SDR_c 11 256 - -
Vivi3g03119 281 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 8 261 - -
Vivi3g03119 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 IPR002347 -
Vivi3g03119 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 IPR002347 -
Vivi3g03119 281 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 IPR002347 -
Vivi3g03119 281 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 141 169 IPR020904 GO:0016491
Vivi3g03119 281 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Vivi3g03119 281 PRINTS Glucose/ribitol dehydrogenase family signature 175 192 IPR002347 -
Vivi3g03119 281 PRINTS Glucose/ribitol dehydrogenase family signature 154 173 IPR002347 -
Vivi3g03119 281 PRINTS Glucose/ribitol dehydrogenase family signature 128 144 IPR002347 -
Vivi3g03119 281 PRINTS Glucose/ribitol dehydrogenase family signature 81 92 IPR002347 -
Vivi3g03119 281 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 183 - -
Vivi3g03119 281 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 7 280 - -
Vivi3g03119 281 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 266 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03119 Vivi-Chr3 52857390 52858569 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03119 11 191 Acyl Lipid Metabolism Gene Families AT1G62610 31.633 3.49e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03119 - - gmx:100775989 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03119 3 52857390 52858569 Vivi3g03119 3 52857390 52858569 ECH