Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03087 ATGAAATTTAGTAACTCTTTGATAATATTTTTACTAACCGTTATAGTTCAGGTGGGAGTTTCAATCGCGGCGCATATACCTTCCGCCGCCTACGACCGCGTTTTATTCTCCGATCGGAGATGCTGCGAACACGAGAACAAAGAGTTAATGATACAGCCGTGCAAAAACGGAACACGGAGAGCGACGACGGAAACGAACTGTGAAATTTGGAGTGAGGCGTGTTCGGAGGCGGTGTTGAGGGTAGCGACGCTGCCGGAGACGGTGGAGTGGTTGAAAAGTGTTCGGAGGAAGATCCATGAGAATCCGGAGTTGGCTTTTGAGGAAATCGAGACGAGCCGTTTGATAAGAGAGGAGTTGGATCTGATGGAAGTTAGTTATCGGTACCCGCTCGCGAAAACCGGTATTCGTGCTTGGATCGGTACGGGAGGTCCGCCTTTTGTTGCAGTTAGAGCTGACATGGACGCACTTCCTATCCAGGAAGGTGTAGAGTGGGAATACAAGTCTAAAGTTGCCGGTAAAATGCACGCTTGTGGGCACGACGCACATGTGGCGATGCTTATTGGTGCGGCCAAGATATTGAAAACTCGTGAGCATTTATTAAAGGGCACTGTAATTCTGTTATTCCAGCCAGCAGAAGAAGCTGGTAATGGTGCAAAGAGAATGATACAAGACGGTGCTTTGGAGGACGTTGAGGCTATATTTGCAGTTCATGTATCCCACGAACATCCAACTGCTATAATTGGGTCGAGGCCTGGACCTCTGTTGGCTGGCTGTGGATTTTTTAGAGCAGTGATTAGTGCGAAAAGAGCCTTTGCTGCAAGCTCTCGCCACTCAGCTGATCCAGTTTTGGCCGCTTCAGCTGCAGTTATCAGCATACAAGGCATTGTCTCTCGCGAATCAAATCCAATGGATTCACAGGTTGTGTCCGTAACTTCGTTTAATGGAGGCAATACTCATGACACGATAACAGACGAGGTTGTCATTGGTGGGACCTTCAGAGCATTTTCTAATTCCAGTTTTTACCAGCTGCGGGAAAGAATAGAGCAGGTGATTGTGGAACAGGCTAGTGTCTACAGATGCTTTGCAGAAGTTGACTTCTTTGAAAAGGAGTACAATATTTACCCTCCCATGATTAATGATGACCAAATGTACGAGCACGTGAAAAAAGTGTCAATCGATTTGCTGGGTCGAAAGAATTTCAAGGTAGTCCCACCTATGATGGGCGCCGAAGATTTCTCTTTTTATTCCCAAGTCATTCCTTCAGCTTTCTTCTACATAGGGATAAGGAATGAAACACTAGGTTCAACTTATACGGGACACTCTCCGCATTTCATGATCGATGAAGATGCTCTACCGATAGGAGCTGCTGTTCATGCCACCATTGCAGAGAGGTACCTCATTGAATTTGGATGA 1413 0.465 MKFSNSLIIFLLTVIVQVGVSIAAHIPSAAYDRVLFSDRRCCEHENKELMIQPCKNGTRRATTETNCEIWSEACSEAVLRVATLPETVEWLKSVRRKIHENPELAFEEIETSRLIREELDLMEVSYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEGVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKTREHLLKGTVILLFQPAEEAGNGAKRMIQDGALEDVEAIFAVHVSHEHPTAIIGSRPGPLLAGCGFFRAVISAKRAFAASSRHSADPVLAASAAVISIQGIVSRESNPMDSQVVSVTSFNGGNTHDTITDEVVIGGTFRAFSNSSFYQLRERIEQVIVEQASVYRCFAEVDFFEKEYNIYPPMINDDQMYEHVKKVSIDLLGRKNFKVVPPMMGAEDFSFYSQVIPSAFFYIGIRNETLGSTYTGHSPHFMIDEDALPIGAAVHATIAERYLIEFG 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03087 470 Gene3D - 256 375 - -
Vivi3g03087 470 Pfam Peptidase family M20/M25/M40 148 463 IPR002933 GO:0016787
Vivi3g03087 470 PANTHER PEPTIDASE M20 FAMILY MEMBER 72 467 IPR017439 GO:0016787
Vivi3g03087 470 Gene3D Zn peptidases 93 459 - -
Vivi3g03087 470 SUPERFAMILY Bacterial exopeptidase dimerisation domain 257 366 IPR036264 -
Vivi3g03087 470 FunFam N-acetyldiaminopimelate deacetylase 256 374 - -
Vivi3g03087 470 PIRSF Amidohydrol_AmhX 80 468 IPR017439 GO:0016787
Vivi3g03087 470 SUPERFAMILY Zn-dependent exopeptidases 84 466 - -
Vivi3g03087 470 Coils Coil 466 470 - -
Vivi3g03087 470 CDD M20_IAA_Hyd 91 466 IPR044757 GO:0009850|GO:0016787
Vivi3g03087 470 NCBIfam amidohydrolase 93 454 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03087 Vivi-Chr3 52278165 52283702 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03087 K21604 - gmx:100785666 748.814