Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03083 ATGCTGAGAAACAAACTAGCAAATACCATATTACCAAATAAGTTGAAGAAGAAAAGCGCTTTTGAGAAACAAATTATGGGAGAGTGGTGGTGGCGGTGTTTATTACTCATTACCACGGTGTTTCTTGGCACTGTCCATGGTGGCAATGTTACTTACGATAGAACATCATTAATCATTGATGGCCAACATAAAATCCTCTTCTCTGGTTCAATTCATTATCCTCGTAGTACTCCTCAGATGTGGCCTAACTTAATTGCCAAAGCCAAGGAAGGAGGATTAGATGTCATACAAACTTATGTATTTTGGAATCTTCACGAGCCTCAACAAGACCAATATGAGTTTAGTGGAAGATTTGATTTAGTTGCATTCATCAAAGAAATTCAAGCACAAGGTTTATATGTGACTCTTCGAATTGGACCTTACATTGAGAGTGAATGTACTTATGGGGGTTTACCATTATGGTTACATGATATTCCAGGAATTGTATTTAGATCTGATAATGATAAATTCAAGTTTCAAATGCAAAGATTTACTACCAAAATTGTTGACATGATGAAATCAGCCAATCTTTTTGCTTCACAAGGAGGACCTATCATACTATCTCAGATTGAGAATGAATATGGAAACATCGAAAGGGCGTTTCAAGCGAATGGACTGGCCTATATTCGTTGGGCCGCCCAAATGGCCGTAGGACTTCAAACGGGTGTGCCTTGGGTAATGTGTAAACAAGACAATGCTCCTGATCCTGTGATCAACGCATGCAATGGCATGCAATGTGGGACAACATTTAAGGGACCAAACTCGCCTAACAAGCCTTCGCTATGGACAGAGAATTGGACTAGTTTTTATCAAGCCTTTGGTGGAAAACCATACTTGAGATCAGCTTCAGACATTGCATATAACGTCGCCTTGTTCATTGCAAAGAAAGGAAGTTATGTCAATTACTACATGTACCATGGAGGAACAAATTTTGATAGATTGGCCTCCGCTTTCATAACAACGGCTTATTATGATGAAGCTCCACTCGATGAATATGGTTTGATTCGGCAACCAAAATGGGGACATCTTAAGGACCTACATGCTGCAGTCAAGTCATGTTCACAACCTCTACTTTATGGAACTCAAACCACATTAAGCTTAGGCTCGCAACAACAAGCTTATGTTTTCAAAAGCTCCACGGAATGTGCTGCCTTCTTGGAAAATAGTGGACCTGGGGATGTCATAATCCAATTTCAAAATATTCCATATCAATTGCCCAGAAAATCAATTAGTATTCTACCAGACTGCAAGAATGTAGTCTTCAATACCGGCAAGGTGAGTATACAGAACAATGCCAGAGTAATGAAAACACAAATACAGTTCAACTCAGCTGAAAAATGGAAAGCGTATACAGAAGTCATCCCTAATTTTGATGATACTTCGTTAAGAGCAAATACGTTATTAGATCAAATCAGCACAGCAAAAGATACATCTGACTATATGTGGTACACTTTCAGGCTTAATGACAACTCTCCTAATGCTCAATCTGTTCTTAGTATATACAGTGAAGGACATGTTTTGCATTCTTTCATCAATGGAGTTTTAAAAGGTTCTGCACATGGAAATCACGAAAATTTGAATGTTGCAATGGAGGAAAGTGTCAATCTGATAAACGGGATGAACAACATTTCTATTCTTAGTGCAACAGTTGGATTGCCGAACTCGGGAGCATTTCTAGAGCGCAGAGTTGCTGGTTTGCGTAAAGTGAAAGTTCAAGAAAGAGATTTAACTAGTTACGCATGGGGTTACCAGGTTGGGTTGTTAGGCGAAAAATTGCAAATCTTTACAGTGAATGGATTAAGTAAAGTTCATTGGGAAGACTTTCAAAGCTCTACTAAACCACTCACATGGTATCAGACCACATTTGATGCACCTGCGGGCAATGATCCTGTTGCGATTAATCTTGGTTCCATGGGAAAGGGACTGGTTTGGGTTAATGGTCAAGGTATTGGTCGATATTGGGTATCTTTCCACACATCAAACGGGACTCCTTCACAACAGTGGTACCACATACCCCGTTCCTTCCTCAAATCTACAGGGAACCTACTTGTTATACTAGAAGAAGAGACTGGGAACCCCTTAGGAATCACTATAGACATAGTAAACATCACAAGTTGA 2157 0.3955 MLRNKLANTILPNKLKKKSAFEKQIMGEWWWRCLLLITTVFLGTVHGGNVTYDRTSLIIDGQHKILFSGSIHYPRSTPQMWPNLIAKAKEGGLDVIQTYVFWNLHEPQQDQYEFSGRFDLVAFIKEIQAQGLYVTLRIGPYIESECTYGGLPLWLHDIPGIVFRSDNDKFKFQMQRFTTKIVDMMKSANLFASQGGPIILSQIENEYGNIERAFQANGLAYIRWAAQMAVGLQTGVPWVMCKQDNAPDPVINACNGMQCGTTFKGPNSPNKPSLWTENWTSFYQAFGGKPYLRSASDIAYNVALFIAKKGSYVNYYMYHGGTNFDRLASAFITTAYYDEAPLDEYGLIRQPKWGHLKDLHAAVKSCSQPLLYGTQTTLSLGSQQQAYVFKSSTECAAFLENSGPGDVIIQFQNIPYQLPRKSISILPDCKNVVFNTGKVSIQNNARVMKTQIQFNSAEKWKAYTEVIPNFDDTSLRANTLLDQISTAKDTSDYMWYTFRLNDNSPNAQSVLSIYSEGHVLHSFINGVLKGSAHGNHENLNVAMEESVNLINGMNNISILSATVGLPNSGAFLERRVAGLRKVKVQERDLTSYAWGYQVGLLGEKLQIFTVNGLSKVHWEDFQSSTKPLTWYQTTFDAPAGNDPVAINLGSMGKGLVWVNGQGIGRYWVSFHTSNGTPSQQWYHIPRSFLKSTGNLLVILEEETGNPLGITIDIVNITS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03083 718 PANTHER BETA-GALACTOSIDASE RELATED 39 716 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 330 346 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 626 640 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 60 77 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 136 155 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 653 669 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 274 289 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 81 99 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 311 326 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 PRINTS Glycosyl hydrolase family 35 signature 193 208 IPR001944 GO:0004553|GO:0005975
Vivi3g03083 718 Gene3D - 586 716 - -
Vivi3g03083 718 FunFam Beta-galactosidase 316 441 - -
Vivi3g03083 718 Pfam Glycosyl hydrolases family 35 56 362 IPR031330 -
Vivi3g03083 718 Gene3D Glycosidases 45 367 - -
Vivi3g03083 718 Pfam Beta-sandwich domain in beta galactosidase 370 439 IPR041392 -
Vivi3g03083 718 SUPERFAMILY Galactose-binding domain-like 423 579 IPR008979 -
Vivi3g03083 718 FunFam Beta-galactosidase 596 718 - -
Vivi3g03083 718 SUPERFAMILY (Trans)glycosidases 47 366 IPR017853 -
Vivi3g03083 718 FunFam Beta-galactosidase 46 367 - -
Vivi3g03083 718 SUPERFAMILY Galactose-binding domain-like 593 714 IPR008979 -
Vivi3g03083 718 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 195 207 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03083 Vivi-Chr3 52219133 52226114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03083 33 717 Glycoside Hydrolase AT5G63800 58.739 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03083 - - gmx:100789220 1175.61