Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03081 ATGCCACCTTCTCCTTCAGAAAATCGAACCAAATGGAGGAAGCGGAAGCGAGATTCGCAAATCACCAGACGTCAACAGAAGCACGACGAGGACGACGACGACGACGACGAAAACCCCAATGCCGACGAAGACGACTACGAGTCAGAGGATCAACACAACCATAACCAACCTAATTCTCAACCGCACCAAGAGATTGAAGTTCTATCCGATCACGGTGTTCAGATTTCGCAGTTTCCGGTTGTCATTAAGCGTGCTGTTAATCGTCCTCACTCATCCGTAACTGCAATTGTTGCTCTTGAACGGGCTATGGAGTTGGGATTGGGAGATAGCAAAGGTCAGCTCCAGAACCCTCCGTTTTTGGAGAATGTTTCACATGGTCAGCTTCAAGCACTGTCGACTGTTCCATCTGATAGCCTTGCTTTGGATCAGGATCGTGCTGATTCCTCTTATGTTATTACTCCGCCTCCGATTTTGGAAGGCCGTGGTGTTGTTAAGCGGTTCGGAAGTAGGGTTCTTGTGCTTCCAATGCATTCAGATTGGTTTTCACCTGGAACAGTGCATCGATTAGAGAGACAAGCAGTGCCTCATTTCTTTTCAGGGAAATCACAGGATCTTACTCCTGAAAAGTACATGGAATGCAGGAACTATATTGTTGCACTATATATGGAGGAGCCGAAGAAGAGGATTACCGCCTCTGATTGTCAGGGATTGCAGGTTGGGGTTGATCAGGAAGATTTGGCTCGAATTGTTCGGTTCCTTGACCACTGGGGAATTATCAATTACTGTGCCCGGATGCCAAGTCATGAGCCTCCAAATGCCGCGTCATGTCTGAAAGAGGATACTAGTGGAGAAGTTCGTGTGCCGTCAGAGGCCTTGAAGTCTATAGATAGTTTGATCAAATTTGATAAGCCCAACTGTAAGCTCAAAGCAGAAGAAGTTTATTCACCATTGACAACACATAGCGCCGATGTCCCTGATCTGGACGGCAGAATAAGAGAGCATCTGTCTGAAAATCATTGCAATTATTGTTCTTGTCCACTTCCTGCTGTATCCTATCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGAATGCTTCCATGATGGAAAATTTGTTGTCGGTCATTCAAGTATAGATTTTATAAGGGTAGATTCTACAAGAGATTATGGTGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGTTGCTGCTTGAAGCAATGGAGATTTACAACGAAAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAAGACGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTGTCATCAAGTGCGATGAATAAAGATGATAGTGGAAGATCACATCATTACTCGAATGGAGATTCTGCAGGACCTGTCCATCAAATCAGAGATTCTGACCGCCTGCCTTTTGCTAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCGGCTTCCTGTGCTCATGCAGCATTATCAGTATTGTCAGGGGATAATACTGGCTCCCAGACGGAGGCATCAGGGCACGATAATAGGACAAATCCAGAAAACATGCATTGTAGAGATGGTGGCTCTCGAGGAGAAGCTGCAATTTCAAATAATCATAATGAGGAAAAGGCAAAAGCACTTAGTTTGCGGGATCAAAGTGAGGGTAGGACCACCCCACTCTCTGCTGAAAAAGTTAATGAAGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCACGAAGAACGAGAAATTCAGAGATTATGTGCTAACATAATTAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACACTGTTGATGAAGGAATGCGAACAAGTGGAAAGGGCAAAACAGAGGTTTGCTGCTGAACGCACCCGCGTTATATCAGCACGATTTGGAACTGCAGGAACTACGCCTGCAATGAATGCATCTGGTGTTGGTCCTTCTATGGTTAGTAATGGTAATAATAGGCAACAAATGATCTCTGCTTCTCCTTCGCAGCCCAGCATCTCAGGGTATGGCAACAACCAACCAGTTCATCCTCACATGTCCTTTGCCCAAAGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAACAATCACAATCAACTTCTTCAGGTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCGGTACCAATCATGCATTGTTGAGGCCCGTGTCAGGAACTAATTCTGGTTTAGGATAA 2349 0.4444 MPPSPSENRTKWRKRKRDSQITRRQQKHDEDDDDDDENPNADEDDYESEDQHNHNQPNSQPHQEIEVLSDHGVQISQFPVVIKRAVNRPHSSVTAIVALERAMELGLGDSKGQLQNPPFLENVSHGQLQALSTVPSDSLALDQDRADSSYVITPPPILEGRGVVKRFGSRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKSQDLTPEKYMECRNYIVALYMEEPKKRITASDCQGLQVGVDQEDLARIVRFLDHWGIINYCARMPSHEPPNAASCLKEDTSGEVRVPSEALKSIDSLIKFDKPNCKLKAEEVYSPLTTHSADVPDLDGRIREHLSENHCNYCSCPLPAVSYQSQKEVDILLCTECFHDGKFVVGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSSAMNKDDSGRSHHYSNGDSAGPVHQIRDSDRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSGDNTGSQTEASGHDNRTNPENMHCRDGGSRGEAAISNNHNEEKAKALSLRDQSEGRTTPLSAEKVNEAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTTPAMNASGVGPSMVSNGNNRQQMISASPSQPSISGYGNNQPVHPHMSFAQRPSMFGLGQRLPLSMIQQSQSTSSGAMFNAPSNVQPGTNHALLRPVSGTNSGLG 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03081 782 SMART sant 394 442 IPR001005 -
Vivi3g03081 782 MobiDBLite consensus disorder prediction 457 489 - -
Vivi3g03081 782 MobiDBLite consensus disorder prediction 31 46 - -
Vivi3g03081 782 MobiDBLite consensus disorder prediction 528 542 - -
Vivi3g03081 782 Gene3D - 178 265 IPR036388 -
Vivi3g03081 782 Gene3D - 394 444 - -
Vivi3g03081 782 CDD SANT 397 439 IPR001005 -
Vivi3g03081 782 PANTHER SWI/SNF COMPLEX-RELATED 61 669 - -
Vivi3g03081 782 SUPERFAMILY Homeodomain-like 171 264 IPR009057 -
Vivi3g03081 782 ProSiteProfiles Zinc finger ZZ-type profile. 335 389 IPR000433 GO:0008270
Vivi3g03081 782 FunFam SWI/SNF complex subunit SMARCC2 isoform C 394 444 - -
Vivi3g03081 782 Pfam Myb-like DNA-binding domain 397 439 IPR001005 -
Vivi3g03081 782 Pfam SWIRM domain 175 261 IPR007526 GO:0005515
Vivi3g03081 782 Pfam SWIRM-associated region 1 598 674 IPR032451 -
Vivi3g03081 782 ProSiteProfiles SWIRM domain profile. 172 270 IPR007526 GO:0005515
Vivi3g03081 782 ProSiteProfiles Myb-like domain profile. 397 440 IPR001005 -
Vivi3g03081 782 SUPERFAMILY Homeodomain-like 395 448 IPR009057 -
Vivi3g03081 782 MobiDBLite consensus disorder prediction 528 561 - -
Vivi3g03081 782 FunFam SWI/SNF complex subunit SMARCC2 isoform c 178 266 - -
Vivi3g03081 782 ProSiteProfiles SANT domain profile. 393 444 IPR017884 -
Vivi3g03081 782 MobiDBLite consensus disorder prediction 1 62 - -
Vivi3g03081 782 MobiDBLite consensus disorder prediction 762 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03081 Vivi-Chr3 52187038 52195107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03081 340 436 EF-hand Containing Proteins AT3G07740 34.906 1.87e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03081 K11649 - gmx:100780440 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03081 3 52187038 52195107 Vivi3g03081 3 52187038 52195107 ECH
Vivi3g03081 3 52187038 52195107 Vivi3g03081 3 52187038 52195107 PCT