Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03065 ATGGAGGACTTGCCGGAGTGCCCGGTGTGTCTTCAAAACTACGACGGCGATAGCGCGATTCCGCGAGTACTATCATGCGGCCACACCGTTTGTGAAGCTTGTCTCGTGGAGCTTCCGGAGCGGTTTCCGAACACTATTCGTTGCCCTGCGTGTACACAACTCGTTAAATACTCTCCCAAACAAGGTCCTTCTTCTCTTCCCAAAAATATTGATCTTCTTAGAATCTGCCTCCAACAAGACTCTTCATCTAAACATCAGAAATCGAATCATCAACGGTCTTTGATCGATTATGGATATTCCTCTCGGTTTTGGTCTGATGAGTTTTATGCTGCTTGGAAGGATTGGATTCTTCCGAACGATGTCGTTTCGGTTGAGGAGAATGGTTTTGGTAGGTTTAGTTCGGGTTCTAAGGGTAGGGTTTGCTTTGGAGTTAACCGAAATGTGAGTCTTGTTCCTATTGTTAGTTTGGTTCTGGTTAGTGATTCCAAGTTTAAGTTTAGTTATGTTGCTTGGGTTATTAAGTGTTTGGAGGGGATGAATGATGTTGCGAGGGAGGGGTTGGGTTTGATTCTGGAGGGTTCTGTGAGGCAGGGTAGGTTTTGTAGGGTTTATGGATTGTGGAGTGAGGTTGTTGGTGGTAGTTTGTATCTGGTTTGTGAGAGGCAGAATGGTAGGGTTTTGGATGAGTTTGGTGGATTGAGGAGTGTGAGTGGAGATGGTTTGGAATTGGATGAAGGCGGGGTTTGTAGGTTTGCGACAATTGCGAAGGGTATTGTTGAAGGTGTGATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGATGTTTGGGAGTTTCCTGCTTCTCGTTTGATGAGCTTGGTGGTGTTTGTGTTGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGATTGTGGATCAGGTTTCTGGTGGTGTGGGTGATGATTGCCAAGCCATGTGTAGGGATTTTTTGAACAATGAGCTTTTTGTTAGCCCGGAGGTTTTGTTTACGTTATTGCACGAGGGGATTATCAATCCAGAGAGTGGGGATTCAAGGTATCCAATTGGGTATGGCTCAGATGTGTGGTCATTGGCTTGTGTGTTGCTGCAGATTCTTTTTAGAAATGCACTCCCTCAGTTTACCTTGCAAAAGAGTGAAGAGAATGGCTTTGATGTCTCGGCTAGTTACATTTCTTGGGTGGAGAGAGTTTGTTCTGTTTTGGAAGAAAAAATTGGTTCCGAAAACCTCCTATCACTTAAACAAACTCTTTGCAAATGTTTGGACATCAATCCTGGAAACCGTCCAGATGTTGTGGATGTAAGGAAATGCATTCAAGATGTGCTAGTCAAACGTCAATTTGGTTTTCTGGGAGAAACAGAGGTCACAGTAAATAGGAACAACACAGGTCACCCTGTGATTCTTGCGAAGTTGTGTCAGTTGCTTCAGGAAAGTTCTAAGGGGCCGAGAGATCATGAGTTGCAGGTGAAAGTAAATGGTGGTGGTCAACCTGAGTTTCTTCAAGGTGCAGAAAATATATCTGACGAAGATTTCGCTACTAGCTTATCCCAGGGAATGACTGAGCTTATAGATCTGCAAGGCCATCTTGGTTCTATCACTGGTTTGGCTGTAGGAGGGGGATATTTGTTTAGCTCCTCTTTTGACAAAACTGTCCGTGTATGGTCCTTGCAGGACTTTTCTCATTTACATACATTTAGAGGTCACGAGAATAAAGTTATGGCTCTAGTTTATGTTGATGATGACGAAGAATCATTGTGTATAAGTGGTGACGGTGGTGGGGGCATATTTTTGTGGGAGATTGCTGCATCTCTTAGGCAAGAACCCTTGAGAAAATGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCATTCCTTGACTGCTTTTGGAAGTCTTCTCTATACTGGAAGTGGAGATAGGACAATAAAAGCTTGGTCAATAAAGGATGGAACTTTGATGTGCACAATGGATGGCCACAAATCTGTAGTTTCCACACTTTCAGTATGTGATGATGTTCTTTACAGTGGTAGTTGGGATGGAACTATCCGATTGTGGAGTCTTAATGATCACAGCCCGTTGGCAGTACTAGGGGATAATTTGCCTGGAGAGATGAAGTCTATCCTGGCTATTACTGTCAACAGGAATTTTCTGGTTGCAGCATATGACAATGGATGCATAAAGGTCTGGAGGAACGACGTGTTCATGACTTCTAAAACATTGCATAGTGGTGCCATTTTTGCTATGAGTATGCAGGGAAAATGTCTATATACAGGAGGTTGGGACACAAATGTTAATATACAGGGTTTTTACATTAACTGGGAAGAGATAGTTACATGA 2349 0.4334 MEDLPECPVCLQNYDGDSAIPRVLSCGHTVCEACLVELPERFPNTIRCPACTQLVKYSPKQGPSSLPKNIDLLRICLQQDSSSKHQKSNHQRSLIDYGYSSRFWSDEFYAAWKDWILPNDVVSVEENGFGRFSSGSKGRVCFGVNRNVSLVPIVSLVLVSDSKFKFSYVAWVIKCLEGMNDVAREGLGLILEGSVRQGRFCRVYGLWSEVVGGSLYLVCERQNGRVLDEFGGLRSVSGDGLELDEGGVCRFATIAKGIVEGVIALNLEGLVAGCLGVSCFSFDELGGVCVDLNEVLVMGRKIVDQVSGGVGDDCQAMCRDFLNNELFVSPEVLFTLLHEGIINPESGDSRYPIGYGSDVWSLACVLLQILFRNALPQFTLQKSEENGFDVSASYISWVERVCSVLEEKIGSENLLSLKQTLCKCLDINPGNRPDVVDVRKCIQDVLVKRQFGFLGETEVTVNRNNTGHPVILAKLCQLLQESSKGPRDHELQVKVNGGGQPEFLQGAENISDEDFATSLSQGMTELIDLQGHLGSITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDDDEESLCISGDGGGGIFLWEIAASLRQEPLRKWYEQKDWRFSGIHSLTAFGSLLYTGSGDRTIKAWSIKDGTLMCTMDGHKSVVSTLSVCDDVLYSGSWDGTIRLWSLNDHSPLAVLGDNLPGEMKSILAITVNRNFLVAAYDNGCIKVWRNDVFMTSKTLHSGAIFAMSMQGKCLYTGGWDTNVNIQGFYINWEEIVT 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03065 782 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Vivi3g03065 782 Gene3D Transferase(Phosphotransferase) domain 1 303 453 - -
Vivi3g03065 782 SMART WD40_4 609 650 IPR001680 GO:0005515
Vivi3g03065 782 SMART WD40_4 522 559 IPR001680 GO:0005515
Vivi3g03065 782 SMART WD40_4 653 690 IPR001680 GO:0005515
Vivi3g03065 782 SMART WD40_4 693 734 IPR001680 GO:0005515
Vivi3g03065 782 SMART WD40_4 562 603 IPR001680 GO:0005515
Vivi3g03065 782 Gene3D - 509 773 IPR015943 GO:0005515
Vivi3g03065 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 699 IPR001680 GO:0005515
Vivi3g03065 782 PANTHER - 3 768 IPR044715 -
Vivi3g03065 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 634 659 IPR001680 GO:0005515
Vivi3g03065 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Vivi3g03065 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 568 IPR001680 GO:0005515
Vivi3g03065 782 PRINTS G protein beta WD-40 repeat signature 637 651 IPR020472 -
Vivi3g03065 782 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Vivi3g03065 782 PRINTS G protein beta WD-40 repeat signature 546 560 IPR020472 -
Vivi3g03065 782 ProSiteProfiles Protein kinase domain profile. 126 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03065 782 ProSiteProfiles Zinc finger RING-type profile. 7 52 IPR001841 -
Vivi3g03065 782 SMART serkin_6 126 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g03065 782 CDD RING-HC_TRIM32_C-VII 5 54 - -
Vivi3g03065 782 SUPERFAMILY WD40 repeat-like 524 770 IPR036322 GO:0005515
Vivi3g03065 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 692 - -
Vivi3g03065 782 SUPERFAMILY Protein kinase-like (PK-like) 317 447 IPR011009 -
Vivi3g03065 782 SMART ring_2 7 51 IPR001841 -
Vivi3g03065 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 561 - -
Vivi3g03065 782 Pfam WD domain, G-beta repeat 527 559 IPR001680 GO:0005515
Vivi3g03065 782 Pfam WD domain, G-beta repeat 656 690 IPR001680 GO:0005515
Vivi3g03065 782 Pfam RING-type zinc-finger 7 49 IPR027370 -
Vivi3g03065 782 SUPERFAMILY RING/U-box 3 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03065 Vivi-Chr3 51811047 51815185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03065 528 762 Acyl Lipid Metabolism Gene Families AT3G18860 26.429 8.56e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03065 - K03070 lja:Lj1g3v0874380.1 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03065 3 51811047 51815185 Vivi3g03065 3 51811047 51815185 ECH