Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02982 ATGTACCCATTTTTCAAGCAAACACAGTCTCTTCACTCCTCACTTTCTTACTGTTCTACTCTCCTACACCACTCTTTATCTCATAAATCCTTCAACTTTCTCAAAACTGTCCATGCTCACTTCCTCAAATTGGGTCTTAATACCTATACATATTTGGGTAACCGCTGTATCGATCTTTATACCGAATTTGGCCATATTGATGATGCCTTGAAGGTGTTTGAGGATATTTCTTATAAGAATTCCACTTCCTGGAACATTTGCTTAAAAGGGTTGTTCAAAAGTGGTCAACTTGACAAGGCCTGCCACATGTTTGATGAAATGCCTGTTAGAGATGTTGTTAGTTGGAACACTATGGTTTCGGGTTATGCGTCTTGTGGGTTTTCTAGTAATGCCTTGGAGCTTTTTGTTGAAATGCAAGATATTGGTGTGAGACCGAGTGTGTTCACTTTCTCAATTTTGACATCGGTTGTGTCGAGTCCTTGTCATGCTAAGGAGGTTCATGGTAGGATGATTAGAAGTTGGATGGATTTGTCGAATGTGGTGATTGGAAATTCGTTGATAGCTATGTATGGGAAGTTTGGTCTTGTTGATTATTCTTTTGGTGTGGTTTTGACTATGAAGCAGCTTGATGTTATATCTTGGAATTCTTTGATATGGGCTTGTCATAGAGCTGGGTGCCAAGAGCTTGCGTTAGAGCAGTTCTGTTGCATGAGAGCTGCTGAGATGTTACCTGATCAGTTTACGTGTTCGATGTTGATGAGTGTTTGTTCCAGCTTGCGAGATTTGGAAAAGGGTAAGCAAGTTTTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTGTCTGGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATGCTGTGCGGTGCTTTAAAGAACAAGAACAATGGGATTCGGCTCTGTGCAATTCCATGATTTCTTGTTATGCTAGACATGGTTTGGGAGAAGATGCTCTTCAGCTCTTTGTGTTGACCTTGAGGAAGAATATCAGACCAACGGAATATACCGTTAGCTGTCTTCTGAGTTCTGTTTCTATTTTCTTGCCAGTAGAACTGGGTAATCAAATACATGCTTTGGTTCCTAAGTTGGGTTTCGAGTCAGATGCGGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGATGATGCCTTGAATATCTTCAACAAAATACAAGCAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGTCTTACAATGCCAGAGTGTCTGTGACCATGGACCTCTTCAAGGAATTGATTAGAGAAGGAATGCTACCTGATCGAATAACATTTGCGGCAGTTCTACTAGCATGCAACTATGGGAGTTTAGTTGATGAAGGAACTAAGATACTTTCTCTAATGGAGATGGAATTTGGAGTAAAACCAGAGGAAGAACATTATTCATATGTTGTAGAGATGTTATGTAGAGCTGGTAAAGTCAAAGAAGCCATTGACATTGTGGAAAAAATGTCGTGTCGAACTACCCCTGACATTTGGAGGTCAATTATTTCTGCGTGTGCAAGATATGGAGACTTGCAAGCTATTGAAATAGTTGCAACAAAGATAATGGAGAGGTCACCACAAACATCCTTACCGTACTTGGTGTTGGCTCAGGTATATCAGATGAGAGGCCGCTGGGAGAGCACGGTTCGAGTGAGGAAGGCTATGAAAAATAGAGGTAGTAGAGAGCTCATTGGATACAGTTGGTTGGGAATAAAAAACCATGTATATACTTTTGGATCAAACCAATTACAGCACTATGGTGGCAAAGATATTTATATGCTACTGAATTTACTGGCATGGGAGATGGAGACTAATTGTAATGTCTAG 1890 0.4 MYPFFKQTQSLHSSLSYCSTLLHHSLSHKSFNFLKTVHAHFLKLGLNTYTYLGNRCIDLYTEFGHIDDALKVFEDISYKNSTSWNICLKGLFKSGQLDKACHMFDEMPVRDVVSWNTMVSGYASCGFSSNALELFVEMQDIGVRPSVFTFSILTSVVSSPCHAKEVHGRMIRSWMDLSNVVIGNSLIAMYGKFGLVDYSFGVVLTMKQLDVISWNSLIWACHRAGCQELALEQFCCMRAAEMLPDQFTCSMLMSVCSSLRDLEKGKQVFAFCFKVGFVYNSIVSGAAIDLFSKCNRLEDAVRCFKEQEQWDSALCNSMISCYARHGLGEDALQLFVLTLRKNIRPTEYTVSCLLSSVSIFLPVELGNQIHALVPKLGFESDAVVANSLVDMYAKFGFIDDALNIFNKIQAKDLVSWNTIMMGLSYNARVSVTMDLFKELIREGMLPDRITFAAVLLACNYGSLVDEGTKILSLMEMEFGVKPEEEHYSYVVEMLCRAGKVKEAIDIVEKMSCRTTPDIWRSIISACARYGDLQAIEIVATKIMERSPQTSLPYLVLAQVYQMRGRWESTVRVRKAMKNRGSRELIGYSWLGIKNHVYTFGSNQLQHYGGKDIYMLLNLLAWEMETNCNV 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02982 629 Pfam PPR repeat 414 443 IPR002885 -
Vivi3g02982 629 Pfam PPR repeat 384 411 IPR002885 -
Vivi3g02982 629 Pfam PPR repeat family 110 153 IPR002885 -
Vivi3g02982 629 Pfam PPR repeat family 311 356 IPR002885 -
Vivi3g02982 629 Pfam PPR repeat 479 511 IPR002885 -
Vivi3g02982 629 Pfam Pentatricopeptide repeat domain 208 256 IPR002885 -
Vivi3g02982 629 Gene3D Tetratricopeptide repeat domain 25 161 IPR011990 GO:0005515
Vivi3g02982 629 Gene3D Tetratricopeptide repeat domain 363 462 IPR011990 GO:0005515
Vivi3g02982 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
Vivi3g02982 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vivi3g02982 629 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 383 608 - -
Vivi3g02982 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Vivi3g02982 629 NCBIfam pentatricopeptide repeat 487 512 IPR002885 -
Vivi3g02982 629 NCBIfam pentatricopeptide repeat 113 146 IPR002885 -
Vivi3g02982 629 NCBIfam pentatricopeptide repeat 83 112 IPR002885 -
Vivi3g02982 629 NCBIfam pentatricopeptide repeat 414 447 IPR002885 -
Vivi3g02982 629 NCBIfam pentatricopeptide repeat 315 346 IPR002885 -
Vivi3g02982 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Vivi3g02982 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Vivi3g02982 629 FunFam Pentatricopeptide repeat-containing protein At3g49710 25 163 - -
Vivi3g02982 629 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 107 IPR046960 GO:0003723|GO:0009451
Vivi3g02982 629 Gene3D Tetratricopeptide repeat domain 273 359 IPR011990 GO:0005515
Vivi3g02982 629 Gene3D Tetratricopeptide repeat domain 162 272 IPR011990 GO:0005515
Vivi3g02982 629 Gene3D Tetratricopeptide repeat domain 463 595 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02982 Vivi-Chr3 49774805 49778491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02982 88 624 Glycoside Hydrolase AT3G49170 29.946 3.31e-76 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02982 - - gmx:100819993 985.711