Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02940 ATGAGTCATAGAGGAATGGACCGTGACGACGAAGACGACGAGGATTACGAAGAGCAGGGCGTCGATTTCGATGAAGAGGAGGCGGATGAGGAAGAGGAGGATAGAGGCGGTGGAAAGAAGCGGAGGAGATCTAGTTACATCGATGATGATGCGGATGAGGTTGATGAAGACGAGGAGGAAGATGACGATGGAGATGATGATTACGATGGAGGTGGAAAAGCTAGCCGCAAGCGGCAGTATAAGAAGGTTTCTGCTTCGAATTTCTTTGACGAGGAGGCTGAGGTTGATACGGATGATGAAGAGGAGGAAGAAGAAGGAGAAGACGATTTCATTGTTCAGCCTGACAATGATCTGCCAGAGGAAGACGATAATAGAGGGAGGCCCCGGCACAGACTGCCACCCCACCAAGAAGACCATGAAGATCTTGAAGCAGTGGCAAGGAGCATTCAAGAGAGATATGGTAAGCATCGGATGGCAGAATATGAAGAAGAAACTACCGATGTAGAACAACAAGCACTTTTGCCGTCTGTGAGAGACCCAAAGCTGTGGATGGTCAAATGTGCGATTGGCCGCGAGCGTGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGATCTGAATTGCAAATTAGATCAGCTATTGCGCTTGATCATCTCAAAAACTATATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGAAATATATTTGGACAAAAAATAACACTTGTCCCAATAAGAGAAATGACCGATGTGCTATCAGTTGAAAGCAAAGCTATTGATCTTGCTAGAGATACATGGGTTAGAATGAAGATAGGCACTTACAAGGGGGACCTTGCCAAAGTTGTGGATGTTGATAATGTGCGACAGAGGGTTACTGTGAAACTAATTCCGAGAATAGACTTACAGGCTCTAGCAAACAAGTTGGAAGGTAGAGAGGTTGTGAAAAAGAAGGCATTTGTTCCCCCTCCTCGTTTTATGAATGTTGATGAAGCTAGGGAACTGCATATCCGTGTGGAGCATAGGCGTGATGCCTATGGGGAACGGTTTGAAGCCATTGGTGGCATGATGTTCAAAGATGGGTTCTTATACAAAACTGTATCTATTAAATCCCTCAGTGCCCAGAACATCAATCCTACGTTTGACGAGCTTGAAAAGTTCCGTAAACCAGGCGAGAATGGAGATGTAGCCAGTTTGTCAACTCTGTTTGCAAACAGAAAGAAAGGACATTTCATGAAGGGTGATGCTGTTATTGTTGTCAAGGGTGATTTAAAGAATTTGAAGGGATGGGTGGAAAAAGTGGATGAGGACAATGTTCATATAAGGCCAGAAATAAAGGGTCTTCCTAAAACTCTTGCAGTAAATGAAAAGGAACTTGTTAAATATTTTGAACCTGGAAACCATGTTAAAGTTGTTTCTGGTGCTCAAGAGGGTGCGACTGGCATGGTTGTAAAGGTGGAGCAGCATGTTCTGATCTTAATATCTGATACCACAAAGGAGCATATCCGTGTGTTTGCAGATGATGTTGTAGAGAGTTCGGAAGTAACCACTGGTGTGACTAGAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGTTTTGGTGTGATAATCCGTGTAGAGAGTGAGGCATTTCAGGTTCTTAAGGGGGTTCCTGACAGACCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAGTGTAAGATAGAAAAGAAAATAAATGTGCAGGATAGGTTTAAAAATACAATATCATCAAAAGATGTTGTGAAGATAGTTGATGGTCCCTGCAGAGGCAAACAAGGTCCTGTGGAGCATATATACAGAGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCGGGCTTTATATGTGTTAAGGCCCACTCATGTGTAGTTGTGGGAGGTTCCCGTTCCAACGGAGATAGAAATGGTGATGCGTATGGAAGATTCTCCGGTCTTAAAAATCCACCTCGCATTCCACAGTCCCCAAAGAGGTTTTCTCGAGGAGGTCATCCGTCTGACTCTGGAGGGAGGCATAGGGGTGGTGGAAGGGGGCATGATGGTTTGACTGGTGCAACTGTTAAAGTACGCATGGGTTCATATAAAGGTTATCGCGGGCGTGTTATAGAAGTTAAAGGAACATCCGTTCGGGTTGAATTGGAGTCCCAGATGAAGGTTGTAACGGTTGATCGCAATCATATAACTGACAATGTGGCTGTTACCCCACAACGTGAAACATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCTTTGCATCCATATATGACTCCGATGAGAGATCCCGGAGCAACTCCAATTCACGATGGAATGAGGACACCTATGCGTGATCGTGCTTGGAATCCTTATGCACCAATGAGTCCTGCTAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCCAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCCCGACCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAATACTCCCGGTGGCAATTATAGTGAGGCCGGAACCCCACGGGACAGTTCTGCCTACGTGAATGCTCCTAGCCCGTATTTACCATCAACACCAGGTGGGCAGCCTATGACACCAAATTCTGCGTCTTATCTTCCTGGAACCCCTGGAGGACAGCCTATGACTCCCGGAACTGGTGGTCTAGACATGATGTCTCCAGTATTAGGTGGGGACAATGAAGGGCCTTGGCTTATGCCAGACATCTTGGTCAATGTACACAGGGCTGGAGAAGAATCTGTTGGAGTTATAAAAGAAGTTCTTCCGGATGGTTCTTATAAGGTAGCTCTTGGGTCTAGCGGAAATGGTGAAACATTAACGGCCCTTCCCGGTGAAATGGAGGCTGTAATTCCAAGAAAATCCGATAAAATAAAGATAATGGCAGGGGCATTGCGTGGTTCCACTGGCAAGTTGATCGGTGTGGATGGCACTGATGGCATTGTTAAAGTAGATGATACATTGGATGTGAAGATTTTAGACTTGGTTATTTTGGCAAAATTAGCTTAA 3102 0.451 MSHRGMDRDDEDDEDYEEQGVDFDEEEADEEEEDRGGGKKRRRSSYIDDDADEVDEDEEEDDDGDDDYDGGGKASRKRQYKKVSASNFFDEEAEVDTDDEEEEEEGEDDFIVQPDNDLPEEDDNRGRPRHRLPPHQEDHEDLEAVARSIQERYGKHRMAEYEEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFEAIGGMMFKDGFLYKTVSIKSLSAQNINPTFDELEKFRKPGENGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELVKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIEKKINVQDRFKNTISSKDVVKIVDGPCRGKQGPVEHIYRGILFIFDRHHLEHAGFICVKAHSCVVVGGSRSNGDRNGDAYGRFSGLKNPPRIPQSPKRFSRGGHPSDSGGRHRGGGRGHDGLTGATVKVRMGSYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHITDNVAVTPQRETSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWANTPGGNYSEAGTPRDSSAYVNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYKVALGSSGNGETLTALPGEMEAVIPRKSDKIKIMAGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 10 32 - -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 797 914 - -
Vivi3g02940 1033 FunFam Transcription elongation factor SPT5 474 523 - -
Vivi3g02940 1033 SUPERFAMILY Translation proteins SH3-like domain 463 522 IPR008991 -
Vivi3g02940 1033 FunFam Transcription elongation factor SPT5 161 263 - -
Vivi3g02940 1033 CDD KOW_Spt5_6 977 1033 IPR041980 -
Vivi3g02940 1033 CDD KOW_Spt5_3 471 521 IPR041976 -
Vivi3g02940 1033 PANTHER SUPPRESSOR OF TY 5 66 1012 IPR039659 GO:0006357|GO:0032784
Vivi3g02940 1033 CDD NGN_Euk 181 263 IPR039385 -
Vivi3g02940 1033 CDD KOW_Spt5_2 420 470 IPR041975 -
Vivi3g02940 1033 Gene3D - 161 263 IPR036735 GO:0006355
Vivi3g02940 1033 Pfam Spt5 transcription elongation factor, acidic N-terminal 88 175 IPR022581 -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 887 901 - -
Vivi3g02940 1033 FunFam Transcription elongation factor SPT5 414 471 - -
Vivi3g02940 1033 Gene3D - 270 312 IPR014722 -
Vivi3g02940 1033 SMART nusgn_4 179 265 IPR006645 GO:0140673
Vivi3g02940 1033 PIRSF Spt5 2 1033 IPR017071 GO:0006357|GO:0032784
Vivi3g02940 1033 CDD KOW_Spt5_5 704 750 IPR041978 -
Vivi3g02940 1033 CDD KOW_Spt5_4 599 641 IPR041977 -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 33 49 - -
Vivi3g02940 1033 SMART kow_9 595 622 IPR005824 -
Vivi3g02940 1033 SMART kow_9 702 729 IPR005824 -
Vivi3g02940 1033 SMART kow_9 982 1009 IPR005824 -
Vivi3g02940 1033 SMART kow_9 419 446 IPR005824 -
Vivi3g02940 1033 SMART kow_9 471 498 IPR005824 -
Vivi3g02940 1033 SMART kow_9 270 297 IPR005824 -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 118 139 - -
Vivi3g02940 1033 Gene3D - 688 752 IPR014722 -
Vivi3g02940 1033 Gene3D - 474 523 IPR014722 -
Vivi3g02940 1033 Pfam KOW motif 474 499 IPR005824 -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 686 700 - -
Vivi3g02940 1033 Gene3D - 414 471 IPR014722 -
Vivi3g02940 1033 SUPERFAMILY Translation proteins SH3-like domain 412 450 IPR008991 -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 50 68 - -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 91 117 - -
Vivi3g02940 1033 ProSitePatterns Ribosomal protein L24 signature. 423 440 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 1 139 - -
Vivi3g02940 1033 Pfam Early transcription elongation factor of RNA pol II, NGN section 181 262 IPR005100 -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 859 878 - -
Vivi3g02940 1033 CDD KOW_Spt5_1 274 311 IPR041973 -
Vivi3g02940 1033 FunFam Transcription elongation factor SPT5 270 312 - -
Vivi3g02940 1033 MobiDBLite consensus disorder prediction 658 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02940 Vivi-Chr3 49028237 49035786 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02940 K15172 - gmx:100801380 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02940 3 49028237 49035786 Vivi3g02940 3 49028237 49035786 ECH