Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02845 ATGGGTTGCTATTGTTCAACTTCAAATTCAAAGAAAGTTAAAACGCCAGGTTATGAAGATCCAACCGTTCTTGCTTCTGAGACACCTTGTGAGTATCCACCATCATTAACTGTTACTGTGAGTGAAGTAGATGCATTGTATGAACTCTATTTGAAGTTAAGCAATTCAATTATTCAAGATGGTCTTATTCACAAGGAAGAATTTCAGCTAGCACTGTTCAGAAATGAAAACCAAAAGAATCTGTTTGCTGACAGGATCTCTTGGTGTTTTTCATCCAAACGCACCTTTAGAAGACAAAATTGCATGTTGTATGATTTGAGACAAACAGGATACATTGAAAGAGAGGAGTTAAAGGAAATGGTATTGGCACTTTTGAATGAATCAGATCTTTTTCTTTCAGATGAGATGATAGAATCAATTGTGGATAAAACATTTAAAGATGCTGATACAAAAGATGATGGAAGAATCGATCAAGATGAATGGAAAGCTTTTGTTTCTCAACATCCTTCTTTGATTAAGAACATGACTCTCCCATATCTAAAGGATATTACTATGGCATTCCCCAGTTTTATTGCAAGAACAGAAGTTGAAGACTCAGAGCTGTGA 606 0.3531 MGCYCSTSNSKKVKTPGYEDPTVLASETPCEYPPSLTVTVSEVDALYELYLKLSNSIIQDGLIHKEEFQLALFRNENQKNLFADRISWCFSSKRTFRRQNCMLYDLRQTGYIEREELKEMVLALLNESDLFLSDEMIESIVDKTFKDADTKDDGRIDQDEWKAFVSQHPSLIKNMTLPYLKDITMAFPSFIARTEVEDSEL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02845 201 CDD EFh 93 166 IPR002048 GO:0005509
Vivi3g02845 201 Pfam EF hand 141 165 IPR002048 GO:0005509
Vivi3g02845 201 SUPERFAMILY EF-hand 33 190 IPR011992 -
Vivi3g02845 201 ProSiteProfiles EF-hand calcium-binding domain profile. 136 171 IPR002048 GO:0005509
Vivi3g02845 201 Gene3D - 35 199 - -
Vivi3g02845 201 PANTHER CALCINEURIN B 2 94 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02845 Vivi-Chr3 47422085 47429135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g02845 38 201 EF-hand Containing Proteins AT5G24270 61.497 1.54e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02845 K06268 - gmx:100811649 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02845 3 47422085 47429135 Vivi3g02845 3 47422085 47429135 ECH