Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g02798 ATGGAAACTTCACTTTGTGTTCCTTCTCCATCTTTCACTGCATTCAGGACAAGCAAAGAGCTTCCCCGTGTGCTTTCCCTGCACGAGTTCAAAAGAATAACATGTTTTTCGGGTTGTAATCAAAGACAAAGTTACAATGAAAACGTTTACGTTATACCTATTCGGACCATGTCTCGATTCTGCATTTCAAGAGCTTTCCCTAGGTCATTGGAACTTGGAGGGACAGGACCACTACATAGGGATGCCCATTCACCTACTAATGACCATCAGAGCTTTGAGAAAGATTTGGAAGAATTATTTGGTGAAGTAAAAAAAATGATCAAGATGGGGAAGAAAAATGACGCCGTAGATCTTCTTAATGCGAATTATGAAATGGTGAAAGAGAGGCTTAGTGTAGGAACTAAAGGAATAGAAGAAGCTGCTATCTTGGATATACTTGCACTCGGTTACATGGCTGTTGGAGACTTGAAATTTGTTGGTTATCTATTGAATTTGTTGAAAGAAGTTGTTGATACTTTAAAGGATGATGAACCACATCTAAGTTCAATACTTATGCATATGGGAAGTATGTATGCGAGATTGAACAAGTTTGAAGAGTCTCTAGACATGTATCAAAGGGCTGTCTGCATCGTGGAAAAGATTTACGGTAAGGATAGCACTATTCTTGTCACACCCCATTTGGGTATAGCAAAAGCTCTTGGTTCAATTGGAAAAGCCACAAAAGCAATAGAGATATACCAACATGTAATCACACTTTTGGAATCAAATAAAGGTGCTGAAAGTAAGGATTTGGTTGTACCTTTACTTAGTCTTGGCAATCTTTTACTGAAAGAAGGAAGAGTCAATGATGCTGAAAGTCGTTTTACTAGGGTTCTAAGCATTTACACAAAAGTATACGGAGAAAATGATGGACGAATTGGAATGGCTATGAGTTCCCTAGCCCAAGTAAAGTGTGCTCTAGGGAAGTCAAGTGAAGCAATTCATTTATTGAAAAGTGCTCTGAAGGTCATGCAGGATTCAAATTACATGTCACCAGACAACAGTATATTGGAGAAAATGAGGGTAGATCTTGCTGAATTACTCCATACTTCTGGGAGAGGACAAGAAGGCAGAGAGATATTAGAGGAGTGCCTATTGATCACAGAGAAGTACAAAGGAAAGGAGCATCCTAGCTTAGCAACACACATGATGAATCTCGCAACTTCGCACACACGGTCAAAGAATCACGCTGAGGCAGAGCATTTGCTGAGAAGAAGTTTGCAAATCATGATAAAGCATAAGGGAACCGATGATCAGTCCATCAGCTTCCCTATGTTGCAACTTGCTGCCACACTATACCATTTGAAAAACGACGAAGAAGCAGAGAAACTCGCCCTAGAGGTTTTGCGCATCCGTGAAAAGGCATTTGGAGAAGACTCTCTTCCTGTCGGGGAGGCTTTGGACTGCTTAGTCTCTATTCAAACCAGACTTGGTAAAGATGACAGAGATTTACTGGAGCTAGTTAGAAGGATCCTGAGTATCCAAGAGAAAGGATTCGGATATGAGAGCGAGCAAGTTTTGCTTACCTTGAAAAAAATTGTATACTATTTAGATAAGTTAGGGAGAAAAGATGAAAAGCTTCTTCTGCAGAGAAGGCTATATGTGCTTAGGAAGAAACATAAGCACATGGATCATCACTAA 1680 0.4 METSLCVPSPSFTAFRTSKELPRVLSLHEFKRITCFSGCNQRQSYNENVYVIPIRTMSRFCISRAFPRSLELGGTGPLHRDAHSPTNDHQSFEKDLEELFGEVKKMIKMGKKNDAVDLLNANYEMVKERLSVGTKGIEEAAILDILALGYMAVGDLKFVGYLLNLLKEVVDTLKDDEPHLSSILMHMGSMYARLNKFEESLDMYQRAVCIVEKIYGKDSTILVTPHLGIAKALGSIGKATKAIEIYQHVITLLESNKGAESKDLVVPLLSLGNLLLKEGRVNDAESRFTRVLSIYTKVYGENDGRIGMAMSSLAQVKCALGKSSEAIHLLKSALKVMQDSNYMSPDNSILEKMRVDLAELLHTSGRGQEGREILEECLLITEKYKGKEHPSLATHMMNLATSHTRSKNHAEAEHLLRRSLQIMIKHKGTDDQSISFPMLQLAATLYHLKNDEEAEKLALEVLRIREKAFGEDSLPVGEALDCLVSIQTRLGKDDRDLLELVRRILSIQEKGFGYESEQVLLTLKKIVYYLDKLGRKDEKLLLQRRLYVLRKKHKHMDHH 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g02798 559 Gene3D Tetratricopeptide repeat domain 349 559 IPR011990 GO:0005515
Vivi3g02798 559 Gene3D Tetratricopeptide repeat domain 159 348 IPR011990 GO:0005515
Vivi3g02798 559 ProSiteProfiles TPR repeat profile. 181 214 IPR019734 GO:0005515
Vivi3g02798 559 SMART tpr_5 435 468 IPR019734 GO:0005515
Vivi3g02798 559 SMART tpr_5 307 340 IPR019734 GO:0005515
Vivi3g02798 559 SMART tpr_5 223 256 IPR019734 GO:0005515
Vivi3g02798 559 SMART tpr_5 393 426 IPR019734 GO:0005515
Vivi3g02798 559 SMART tpr_5 181 214 IPR019734 GO:0005515
Vivi3g02798 559 SMART tpr_5 265 298 IPR019734 GO:0005515
Vivi3g02798 559 SUPERFAMILY TPR-like 178 422 IPR011990 GO:0005515
Vivi3g02798 559 Pfam MalT-like TPR region 173 462 IPR041617 -
Vivi3g02798 559 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 106 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g02798 Vivi-Chr3 46860403 46863530 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g02798 - - aprc:113852595 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02798 3 46860403 46863530 Vivi3g02798 3 46860403 46863530 ECH